Due to technical reasons this service will not be available for 7 days from 27 Nov to 04 Dec 2017
From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS14600 [old locus tag: SAUSA300_2628 ]
  • pan locus tag?: SAUPAN006457000
  • symbol: SAUSA300_RS14600
  • pan gene symbol?: rarD
  • synonym:
  • product: protein RarD

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS14600 [old locus tag: SAUSA300_2628 ]
  • symbol: SAUSA300_RS14600
  • product: protein RarD
  • replicon: chromosome
  • strand: -
  • coordinates: 2854569..2855477
  • length: 909
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_007793 (2854569..2855477) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAATTCAGAGTATAAAAAAGGCATATTTTTAGCACTCAGTGCATACATTCTGTGGGGA
    ATACTACCTATATATTGGCAGTTCGTTGATGCAATAGGCGCATTTGAAATTTTAGCCTTT
    CGTATTATATTTTCAGCAATATTCATGATTTTCATACTCGCGGTTGGACAAAAACAACGC
    AATGCATTTCAACGAGATATGAATCAATTGTTAGGCAAGCCCATTCAGCTATTAGCGATT
    GTCGTAGCAGGCTATGTCATTACATTAAATTGGGGTACATTTATTTGGGCTGTAACGAAC
    GGTCACGTCCTACAAACAAGTTTAGGTTATTATATAAATCCACTTGTTAGCATTTTGCTC
    GCACTTATCTTTTTAAAAGAAAGATTCAATAAATTTGAATGGCTAGCCATTTTATTCGCA
    TTCATCGGTGTATTATATATGACGCTCAAGATTGGAGAATTCCCAATCGTCTCTATTATA
    TTAGCGTTATCCTTTGGTACATACGGATTATTGAAAAAAGTAGTACATATTGATGCCATC
    AGCAGTATTACGATTGAATGTATTGTTACCGCACCTGCTGGACTAATATACGTTATTTAT
    TTATGGCAGCAACATCAGATGTCATTTGGATTGAACATGTCATCATTTTGGTTGTTATTT
    TCTGGTGCTATTACGGCAATACCACTAATCCTATTCTCAGCCGGGGCAAAACGTATTCCA
    CTTTCGCTAATAGGATTTATTCAATACGTTGGACCAACAATAATGTTTGTACTCGGCATA
    TTTGTTTTCAAAGAGCCTTTTAGTATAGATCAATTAATTACGTTTATATTTATTTGGACA
    GGTATTGTGTTATATAGTCTTTCTCAATACATTAAATTGAAGAAACATCCGGTCGCAAAA
    ACCCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_RS14600 [old locus tag: SAUSA300_2628 ]
  • symbol: SAUSA300_RS14600
  • description: protein RarD
  • length: 302
  • theoretical pI: 9.93378
  • theoretical MW: 34119.9
  • GRAVY: 0.97053

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsUnknown substrateprotein RarD (TIGR00688; HMM-score: 210.5)
    MetabolismTransport and binding proteinsAmino acids, peptides and aminescarboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 38)
  • TheSEED:
  • PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 90.2)
    no clan definedRseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 6.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.134
    • Ymax_pos: 63
    • Cmax: 0.247
    • Cmax_pos: 32
    • Smax: 0.211
    • Smax_pos: 1
    • Smean: 0.073
    • D: 0.11
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

  • GI: 447006548 NCBI
  • RefSeq: WP_001083804 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIPLSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SAUSA300_RS14600 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]