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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03245 [old locus tag: SA0561 ]
  • pan locus tag?: SAUPAN002469000
  • symbol: SA_RS03245
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS03245 [old locus tag: SA0561 ]
  • symbol: SA_RS03245
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 654537..655058
  • length: 522
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (654537..655058) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGGAGGTTATATCATTGTCTGAGAAAAAAGGCTTTAATTTTAATATCATAAAAAATGAC
    CCTCTAGATGGTCATAAAGGTACAAATATTGGTTCAATTAGCTTAGACAATATTGCACCA
    GTTTTTATCGATGTTGCTAACAAAGAAGCATTTATTGATATTGGAGGCATGCATGCTCGT
    GCCAAAGTTGAAAAAGGTGTGAAATGGATTACTGATAAAGCTGCTGTTGAAGGCGATGAA
    GCTAAAGAATATTGGTTGTGTTGGGTAACAACAGAACGTAATGAACAAGGACCATATTAC
    GCTGGTTTAACAGCGTGCTATTTATTAGTGAATAAAGCAATTCGTCGTGGTTATAAAAGT
    ATGCCTGAACATGTTAATATGATGGATAAATCAATGAAACATCATATTATCATTGATCAA
    ATTGGTGACGAGAATAAAGCTATTTTAAAAGACTTTTTAATGAACCATGATGAAGGTATG
    TGGAAGCTTTCTTCTGATGCTTTACATCAAGCATTTAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    522

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS03245 [old locus tag: SA0561 ]
  • symbol: SA_RS03245
  • description: hypothetical protein
  • length: 173
  • theoretical pI: 6.39526
  • theoretical MW: 19555.3
  • GRAVY: -0.372832

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan definedYwhD; YwhD family (PF08741; HMM-score: 258.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.106
    • Ymax_pos: 26
    • Cmax: 0.11
    • Cmax_pos: 60
    • Smax: 0.153
    • Smax_pos: 19
    • Smean: 0.103
    • D: 0.105
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_001792725 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS03245 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]