From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03870 [old locus tag: SA0680 ]
  • pan locus tag?: SAUPAN002614000
  • symbol: SA_RS03870
  • pan gene symbol?:
  • synonym:
  • product: 5'-3'-deoxyribonucleotidase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03870 [old locus tag: SA0680 ]
  • symbol: SA_RS03870
  • product: 5'-3'-deoxyribonucleotidase
  • replicon: chromosome
  • strand: +
  • coordinates: 776469..777011
  • length: 543
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (776469..777011) NCBI
  • BioCyc: SA_RS03870 BioCyc
  • MicrobesOnline: see SA0680

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGACCCGTAAATCAATCGCGATTGATATGGATGAAGTATTGGCAGATACATTAGGAGAA
    ATCATTGATGCTGTCAATTTTAGAGCGGATTTAGGTATTAAAATGGAAGCTTTGAATGGT
    CAAAAACTTAAACATGTTATTCCTGAACATGATGGATTAATTACAGAAGTATTGAGAGAA
    CCAGGCTTCTTCAGACATCTTAAAGTGATGCCACATGCACAAGAAGTTGTGAAAAAATTA
    ACTGAACATTATGATGTATATATTGCTACAGCAGCAATGGATGTACCAACATCATTTAGT
    GATAAATATGAATGGTTACTAGAGTTCTTTCCATTTTTAGATCCTCAGCATTTTGTTTTT
    TGTGGTAGAAAAAACATCGTTAAAGCTGATTATTTAATAGATGACAATCCTAGACAGCTT
    GAAATTTTTACTGGTACACCGATTATGTTTACAGCAGTGCATAATATTAATGATGATCGA
    TTTGAACGCGTAAATAGCTGGAAAGATGTAGAACAGTATTTTTTAGATAATATTGAGAAA
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    543

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS03870 [old locus tag: SA0680 ]
  • symbol: SA_RS03870
  • description: 5'-3'-deoxyribonucleotidase
  • length: 180
  • theoretical pI: 4.81742
  • theoretical MW: 20960.9
  • GRAVY: -0.242778

Function[edit | edit source]

  • reaction:
    EC 3.1.3.-?  ExPASy
  • TIGRFAM:
  • TheSEED: see SA0680
  • PFAM:
    HAD (CL0137) NT5C; 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) (PF06941; HMM-score: 122.5)
    and 1 more
    NIF; NLI interacting factor-like phosphatase (PF03031; HMM-score: 13)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mg2+
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00235
    • TAT(Tat/SPI): 0.000241
    • LIPO(Sec/SPII): 0.000272
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK

Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]