From AureoWiki
Jump to: navigation, search

NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS04305 [old locus tag: SA0755 ]
  • pan locus tag?: SAUPAN002816000
  • symbol: SA_RS04305
  • pan gene symbol?: ohr
  • synonym:
  • product: organic hydroperoxide reductase OsmC/OhrA

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS04305 [old locus tag: SA0755 ]
  • symbol: SA_RS04305
  • product: organic hydroperoxide reductase OsmC/OhrA
  • replicon: chromosome
  • strand: -
  • coordinates: 862690..863112
  • length: 423
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002745 (862690..863112) NCBI
  • BioCyc: G1G21-859 BioCyc
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGCAATACATTATGAAACTAAAGCGACGAATGTTGGCGGACGTAAAGGACATGTTTAT
    ACTGATGATCGAGCGTTAGATATTGATATCGTTCCGCCTGCTCAAGCAGATGGTAAAGCT
    ACTAACCCCGAACAATTATTTGCAGCAGGTTATGCATCTTGCTTCAACGGTGCTTTCGAC
    CTAATTTTAAAGCAAAACAAAGTGCGTGATGCTCATCCAGAAGTAACACTAACAGTGAGA
    CTAGAAGATGATTCAGACTCAGAAAGTCCTAAATTAAGTGTTTCAATTGATGCGACAATT
    AAAAATGTTATATCTCAAGAAGAAGCTGAAAAATATTTACAAATGGCTCATGAATTTTGT
    CCATATTCAAAAGCGACTCAAGGAAATATTAATGTCGATTTAAATGTAAATGTTGTAGAT
    TAG
    60
    120
    180
    240
    300
    360
    420
    423

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SA_RS04305 [old locus tag: SA0755 ]
  • symbol: SA_RS04305
  • description: organic hydroperoxide reductase OsmC/OhrA
  • length: 140
  • theoretical pI: 4.52657
  • theoretical MW: 15339
  • GRAVY: -0.419286

⊟Function[edit source | edit]

  • TIGRFAM:
    Cellular processesCellular processesDetoxificationperoxiredoxin, Ohr subfamily (TIGR03561; HMM-score: 153)
    and 2 more
    Cellular processesCellular processesDetoxificationperoxiredoxin, OsmC subfamily (TIGR03562; HMM-score: 52.7)
    peroxiredoxin, SACOL1771 subfamily (TIGR03563; HMM-score: 29)
  • TheSEED:
  • PFAM:
    no clan definedOsmC; OsmC-like protein (PF02566; HMM-score: 65.1)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.135
    • Ymax_pos: 37
    • Cmax: 0.222
    • Cmax_pos: 37
    • Smax: 0.162
    • Smax_pos: 2
    • Smean: 0.075
    • D: 0.111
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446897204 NCBI
  • RefSeq: WP_000974460 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SA_RS04305 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

Retrieved from "https://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS04305&oldid=70417"