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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS10870 [old locus tag: SA1889 ]
  • pan locus tag?: SAUPAN005362000
  • symbol: SA_RS10870
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS10870 [old locus tag: SA1889 ]
  • symbol: SA_RS10870
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2142431..2142640
  • length: 210
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (2142431..2142640) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAA
    TTGACAGAACGCATTTCAAATATGATAGGTGTTCATCAAGTGAATATTAATATAATAGAT
    GGTCAAGTAACTGTATCGTATGAGACACCAGCAAATTTGAATAGTATTGAAAAAGAAATC
    TATGATGAAGGATACAAAATTGTATTTTAG
    60
    120
    180
    210

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS10870 [old locus tag: SA1889 ]
  • symbol: SA_RS10870
  • description: hypothetical protein
  • length: 69
  • theoretical pI: 4.10098
  • theoretical MW: 7843.71
  • GRAVY: -0.224638

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundscopper ion binding protein (TIGR00003; HMM-score: 25.7)
  • TheSEED:
  • PFAM:
    no clan definedHMA; Heavy-metal-associated domain (PF00403; HMM-score: 23.4)
    NPHI_C; Nucleoside triphosphatase I C-terminal (PF08469; HMM-score: 14.1)
    Spore_YhcN_YlaJ; Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) (PF09580; HMM-score: 14)
    Sialidase (CL0434) HN; Haemagglutinin-neuraminidase (PF00423; HMM-score: 13.7)
    no clan definedPAC1; Proteasome assembly chaperone 4 (PF16094; HMM-score: 12.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.117
    • Ymax_pos: 48
    • Cmax: 0.114
    • Cmax_pos: 22
    • Smax: 0.166
    • Smax_pos: 41
    • Smean: 0.099
    • D: 0.11
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446503938 NCBI
  • RefSeq: WP_000581792 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVTVSYETPANLNSIEKEIYDEGYKIVF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS10870 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]