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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS11410 [old locus tag: SA1980 ]
  • pan locus tag?: SAUPAN005569000
  • symbol: SA_RS11410
  • pan gene symbol?:
  • synonym:
  • product: alanine racemase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS11410 [old locus tag: SA1980 ]
  • symbol: SA_RS11410
  • product: alanine racemase
  • replicon: chromosome
  • strand: -
  • coordinates: 2249343..2250413
  • length: 1071
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (2249343..2250413) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGCACACGTTAACATAAATATATCGAAGATTAAATATAACGCCAAAGTACTTCAAACA
    GTTTTTCAAAGTAAAAATATACAATTCACACCAGTAATTAAGTGTATAGCTGGTGACCGT
    ACAATTGTAGAAAGCTTAAAAGCGTTAGGTATCAATCATGTTGCAGAATCCAGATTGGAT
    AACATAATTAGTATTGCAGATCAGGATTTAACATATACGTTATTGCGTACGCCTGCCAAA
    AAAGAGATTTCAGATATGATAGAAAAAGTTGATATGAGTATCCAAACAGAATTATCTACC
    ATACATCAAATAAATGAAGTAGCAGAAGTTTTAGGAAAAAAACATAAGATTTTATTAATG
    GTAGATTGGAAAGATGGCCGTGAAGGTGTTCTGACTTATGATGTTTTAGATTATATTAAA
    GAGATTATTCACTTGAAAAATATCCATTTTGTAGGTTTAGCATTCAATTTTATGTGTTTT
    AAATCTGATGCGCCAAGTGATGATGATATCTTTATGATTAATCGATTCGTCTCAGCTGTT
    GAAAGAGAAATAGGATATCGATTGAAAATTATTTCAGGTGGTAATTCGAGCATGTTACCA
    CAACTTTTATATAATGATTTGGGTAAAATAAATGAATTGCGAATAGGTGAAACGTTGTTT
    AGAGGTGTTGATACAACGACAAATCAAGCGATCGCTATGTTATATCAAGATGCGATTACA
    TTGGAGGCTGAGATTTTAGAAATTAAACCTCGAGTTAATACACAAACGCATGAATCATTC
    TTACAAGCTATTGTAGATATTGGTTATTTAGATACAAAAGTCGATAATATTTCACCTATG
    GATCAGCATATCAATATTTTAGGCGCTTCGAGTGATCATTTAATGCTTGATTTAAATGGT
    CAAGGACACTATCAAGTTGGAGATCATATATCTTTTTCATTAAATTATGAAGCACTTTCT
    CATTCGATGTATATGAAAAATTTACATAAGGTATATATTGATGATTCAAAGATTGATACG
    CTACTTCAAAATTTTGATGTGAAATCTCCTGCTATGGTAAACCAATATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
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    660
    720
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    840
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    1020
    1071

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS11410 [old locus tag: SA1980 ]
  • symbol: SA_RS11410
  • description: alanine racemase
  • length: 356
  • theoretical pI: 5.71834
  • theoretical MW: 40321.1
  • GRAVY: -0.0867978

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cell structureCell envelopeBiosynthesis and degradation of murein sacculus and peptidoglycanalanine racemase (TIGR00492; EC 5.1.1.1; HMM-score: 32.2)
  • TheSEED:
  • PFAM:
    TIM_barrel (CL0036) Ala_racemase_N; Alanine racemase, N-terminal domain (PF01168; HMM-score: 70.7)
    no clan definedCPV_Polyhedrin; Cypovirus polyhedrin protein (PF17515; HMM-score: 13.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.152
    • Ymax_pos: 18
    • Cmax: 0.115
    • Cmax_pos: 24
    • Smax: 0.26
    • Smax_pos: 6
    • Smean: 0.206
    • D: 0.173
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446874368 NCBI
  • RefSeq: WP_000951624 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MAHVNINISKIKYNAKVLQTVFQSKNIQFTPVIKCIAGDRTIVESLKALGINHVAESRLDNIISIADQDLTYTLLRTPAKKEISDMIEKVDMSIQTELSTIHQINEVAEVLGKKHKILLMVDWKDGREGVLTYDVLDYIKEIIHLKNIHFVGLAFNFMCFKSDAPSDDDIFMINRFVSAVEREIGYRLKIISGGNSSMLPQLLYNDLGKINELRIGETLFRGVDTTTNQAIAMLYQDAITLEAEILEIKPRVNTQTHESFLQAIVDIGYLDTKVDNISPMDQHINILGASSDHLMLDLNGQGHYQVGDHISFSLNYEALSHSMYMKNLHKVYIDDSKIDTLLQNFDVKSPAMVNQY

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS11410 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]