NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS13075 [old locus tag: SA2279 ]
- pan locus tag?: SAUPAN006091000
- symbol: SA_RS13075
- pan gene symbol?: pgcA
- synonym:
- product: phosphoglucomutase
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS13075 [old locus tag: SA2279 ]
- symbol: SA_RS13075
- product: phosphoglucomutase
- replicon: chromosome
- strand: +
- coordinates: 2554995..2556803
- length: 1809
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (2554995..2556803) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1801ATGCATTTTCATACACATCTATTATATAATACTTGTGAAAAGTATTGTCTTGGGGCTGTG
TTTTTTTACTTTTGGGGCGTATTTCTTTATAATTCATTACATAAATGTAAGGGCTTTAGT
TTTCATGTTTTATTAAGTCTAACTGAGATTTTGAAAGGATGTTTAGCAACAATGGATAAA
GAATTATGGATAGAAAGAGCTAATGATAGTTTAGTTAAACATTTTTATGAGCAGCAATCT
GACATTGAACAGCGAGAAGGTTTTGAAAGTAAATTAACATTTGGTACTGCGGGTATACGC
GGAAAATTCGGTCTTGGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTA
GGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGAT
ATTAGACATCTTTCAACTGAATTCGCCCAAATTATTGCTAATGTATTAGCAAACCATCAA
ATAACAGTTTATTTACCTGATACATATAAAACGACACCGGAATTATCGTTCGCGGTTCGC
AATCTTAATACTACTGCCGGCATTATGATTACAGCAAGTCATAATCCGAAAGACTATAAC
GGCATTAAAGTATATGGTTCTGATGGCGCGCAATTATCGACTGATGCATCTGAGCTTGCA
AGTCGTTATATCGAAGAAGTTGGCGATCCATTACAGATTGATATACCTATTTCAAAACAA
AATACATCTTATATCAAACCTTTTCCGAAATCTGTAACTGATGACTATATGAAACACATT
CAAAATATGATTGGCTATATTCCTAAATCTGATTTACAAGTTGTGTTCACTAGTTTGCAT
GGTACAAGTGTTCCAATTGTACCTGAGTTATTAAAATCTTTGAATTTCAATCAATTTAAT
CTTGTAGATGCACAATGTAAACCTGATCCGAATTTTAGTTCAGTTCAAAGTGCTAATCCT
GAAGATCATCGCGCTTTTGATCAAGCAGTCGAACTTGCAAATAAAAGTCATGCAGACTTA
TTAATATCAACTGACCCAGATGCAGATCGACTTGGTATTGCTGAACGTGATGCACATGGT
CATATCACATATTTTAATGGCAACCAAATTGGTGCGCTGTTACTTAATTATCGTATTCAA
CAAACGTCTCAATTACGTCACCGCTTAATGATTCAATCTATTGTAAGTAGTGAGTTAACA
AAGTCATTAGCACGCTATAATAATGTTAAATACAAAGAGGTACTGACGGGCTTTAAATTT
ATTGCTCAGGAAATAAGACAACTGGATGATCATCAAAATATGATTTTCGCATTTGAAGAG
AGTTACGGTTTTCTATCAGAGCCTTTTGTACGTGATAAAGATGCCGTACAAATTGTGCCA
CTCATTATAAAATACGCTTCTGAGTTAAAATTATATGGCAAAACATTGAAAGATGAATTA
GAACAGATTTATCAAACTGTTGGTAGACATGAGGATACATTATTCTCGCATACGCTAGAA
GGATTAGAAGGTAAGAAAAAAATTGAATCAATTATGACACATTTCCGTTCAAATCCACCG
CAAGAGATTCAAGGACTGAAAGTGAAAGCAATTGAAGATTATTTAACTAGCGAGGTTTAT
CATTTGGATAAAGATACAACGTCACAGATTAATTCTTCTAAATCAAATGTTATTCGTGTC
TTATTTGACGAAGGATTTATCGCTTTACGTCCTTCTGGTACTGAACCTAAAATTAAATTA
TATGTGTCGTTAAAATGTCCGGATTTTGATGATGTAGCTCAAAAAATTAATGCGATGATT
TTTAGCTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS13075 [old locus tag: SA2279 ]
- symbol: SA_RS13075
- description: phosphoglucomutase
- length: 602
- theoretical pI: 6.58718
- theoretical MW: 68329.3
- GRAVY: -0.277076
⊟Function[edit source | edit]
- reaction: EC 5.4.2.2? ExPASyPhosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate
- TIGRFAM: Central intermediary metabolismAmino sugarsphosphoglucosamine mutase (TIGR03990; EC 5.4.2.10; HMM-score: 171.5)Cell envelopeBiosynthesis and degradation of murein sacculus and peptidoglycanphosphoglucosamine mutase (TIGR01455; EC 5.4.2.10; HMM-score: 98)Central intermediary metabolismAmino sugarsphosphoglucosamine mutase (TIGR01455; EC 5.4.2.10; HMM-score: 98)Energy metabolismSugarsphosphoglucomutase, alpha-D-glucose phosphate-specific (TIGR01132; EC 5.4.2.2; HMM-score: 74.5)
- TheSEED:
- PFAM: no clan definedPGM_PMM_I; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I (PF02878; HMM-score: 142.1)PGM_PMM_II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PF02879; HMM-score: 92.3)PGM_PMM_III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III (PF02880; HMM-score: 57)PGM_PMM_IV; Phosphoglucomutase/phosphomannomutase, C-terminal domain (PF00408; HMM-score: 31.8)Peptidase_MH (CL0035) Amidase_3; N-acetylmuramoyl-L-alanine amidase (PF01520; HMM-score: 12.7)no clan definedPPP4R2; PPP4R2 (PF09184; HMM-score: 12.4)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors: Mg2+
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.123
- Ymax_pos: 56
- Cmax: 0.118
- Cmax_pos: 41
- Smax: 0.219
- Smax_pos: 43
- Smean: 0.102
- D: 0.115
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
- GI:
- RefSeq: WP_001835549 NCBI
- UniProt:
⊟Protein sequence[edit source | edit]
- MHFHTHLLYNTCEKYCLGAVFFYFWGVFLYNSLHKCKGFSFHVLLSLTEILKGCLATMDKELWIERANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGKFGLGEGRLNKFTIEKLALGLARYLNAQTNSPTIVIHYDIRHLSTEFAQIIANVLANHQITVYLPDTYKTTPELSFAVRNLNTTAGIMITASHNPKDYNGIKVYGSDGAQLSTDASELASRYIEEVGDPLQIDIPISKQNTSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVFTSLHGTSVPIVPELLKSLNFNQFNLVDAQCKPDPNFSSVQSANPEDHRAFDQAVELANKSHADLLISTDPDADRLGIAERDAHGHITYFNGNQIGALLLNYRIQQTSQLRHRLMIQSIVSSELTKSLARYNNVKYKEVLTGFKFIAQEIRQLDDHQNMIFAFEESYGFLSEPFVRDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGLEGKKKIESIMTHFRSNPPQEIQGLKVKAIEDYLTSEVYHLDKDTTSQINSSKSNVIRVLFDEGFIALRPSGTEPKIKLYVSLKCPDFDDVAQKINAMIFS
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS13075 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]