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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000027
- pan locus tag?: SAUPAN006529000
- symbol: JSNZ_000027
- pan gene symbol?: —
- synonym:
- product: nuclease domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000027
- symbol: JSNZ_000027
- product: nuclease domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 33738..35468
- length: 1731
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1681ATGGATTTACATTCTAACTTAGATATAATTGTTAGTAATGGATACCGAGAGAATGTCTAT
AATATTGTATTCAGAGAATCAATAAAAGATATAAATTTTGAAAAAGATGTATTATCCTTT
AAAGAGTATCACTCTATGAAATTTCGTCATAAATCTACTGATTATAATGAAAAATTATAT
TTCAATGGTTTCGACACTATTGTGGACGATATATTAAAAATTGATAAAAAGGGAAATAGT
TATCTTTCAAACGCTACACTAGATATAATTAATTACACTAGTAATAATGATCAAAATGTA
CTAGTTCCTGGTTATTATTTATTAACATTGGTCAATGAAAAAACTAAGTATGCCATTATA
AAAATAGTTCCTAAGGATTTTACTGAGGAAGAGTGGAAATCATTATATGAAGACGTTAAT
AGTTACTTAAATGGTTTAGCAAATTCATTTGTAAATAGAAATAATGTTACGGTAATTCAA
AACAAAAAAGACAATAATTTGTATAATAAAATCAATTTCATTGATAAATATTTTATAAAA
ATAATTAATTCTGTAAATCAATTAATAGTGAACCCTAGGTTAACAATTCAAAAAAATTAT
AAATGGGTTCCTAAACACACACAACCACATGTCGATAAAAAAACTATTAAATATTCATCT
AAATATCCAAATAAAACACAATATTTGTATACTTACAAAAGAGTTATTAATTATAATATC
TCAGAAAATATGTGGTTGAAATTTGTAGTTGAGTTTTTATTAAAAGAACTAAACTCAATT
GGTAAAGAAATTATTTTGAAAATTGAAAATGAAAATTATAAATATAATTCGAAATATAGT
AGTGAGATAAAAAAAGCTAAAATTACTAAGAATAATTTAAACCAAGCTAAAAAAAATATT
ATTATCCTTAAAAATTTAATAATAAAATTAAGAAATAGTGAATGGTATAGTCAAGTTTCC
TATAAAAATAATATGGTGCCAACTAAATCTTCACTTATGAATCAAAACTATAATTTATTA
TATACATGGTATGTAGAATTTAATAAAAGTAATTTTGATTTCATCTTTTCTGAACAGGTA
CTAAATTCATGGAAAAAAACAGATGAACTATATGAGATTTGGTGTTATATCAATATAATT
GAAATAATAAGAAGTAGTGGTTTTATGCCTGTAAAAGGATGGGTTTTTAATGGGGATATT
CAAAATGATCTCGATGAAGGTACTTATGTAACAATGAAAAAAGCAGAAACCACTTTAAAT
ATACACTATAATACACTTCTTAAGTATAAAAGTTCTGAAACTAATTTAGTAAATCCACTT
TATACTGGAAACAAAAAAAATAAACCCGACATTAGAATTGATATTTTTGTAGGCGGTATA
TATTTAAAAAGTATACCGATAGAAGCTAAGTACAGAAAACTGAAAAATATAACCGGAGAA
AAAATGGGATCTCTTAAACAATTACTTGCTTACAGAGATTCTCCAAAATCTTTATTACAT
TTAGCAGGCGCTAAACACATTAGAAAAAATAACCATACGGTTATTACAAAGGTTATTATT
TTATACCCTAAAGATACTAGTTCTAACTCTAAAGCTGATATTTTATCTGTTGAGCATGGT
TTGTTATTCTATGAATTTGGACCTAATTATATAGATACATCATTGAAAACCACATTGATT
GAAGAAATTAATGAAGCATTTGAAATTTATAATGATATTTATAAAAACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000027
- symbol: JSNZ_000027
- description: nuclease domain-containing protein
- length: 576
- theoretical pI: 9.69351
- theoretical MW: 67816.2
- GRAVY: -0.506771
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: PDDEXK (CL0236) PDDEXK_7; PD-(D/E)XK nuclease superfamily (PF04411; HMM-score: 30.1)DUF2357; Domain of unknown function (DUF2357) (PF09823; HMM-score: 27.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.1453
- Cytoplasmic Membrane Score: 0.3052
- Cell wall & surface Score: 0.0016
- Extracellular Score: 0.5479
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001951
- TAT(Tat/SPI): 0.000127
- LIPO(Sec/SPII): 0.000385
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MDLHSNLDIIVSNGYRENVYNIVFRESIKDINFEKDVLSFKEYHSMKFRHKSTDYNEKLYFNGFDTIVDDILKIDKKGNSYLSNATLDIINYTSNNDQNVLVPGYYLLTLVNEKTKYAIIKIVPKDFTEEEWKSLYEDVNSYLNGLANSFVNRNNVTVIQNKKDNNLYNKINFIDKYFIKIINSVNQLIVNPRLTIQKNYKWVPKHTQPHVDKKTIKYSSKYPNKTQYLYTYKRVINYNISENMWLKFVVEFLLKELNSIGKEIILKIENENYKYNSKYSSEIKKAKITKNNLNQAKKNIIILKNLIIKLRNSEWYSQVSYKNNMVPTKSSLMNQNYNLLYTWYVEFNKSNFDFIFSEQVLNSWKKTDELYEIWCYINIIEIIRSSGFMPVKGWVFNGDIQNDLDEGTYVTMKKAETTLNIHYNTLLKYKSSETNLVNPLYTGNKKNKPDIRIDIFVGGIYLKSIPIEAKYRKLKNITGEKMGSLKQLLAYRDSPKSLLHLAGAKHIRKNNHTVITKVIILYPKDTSSNSKADILSVEHGLLFYEFGPNYIDTSLKTTLIEEINEAFEIYNDIYKN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000027 < JSNZ_000028 < JSNZ_000029
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)