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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000028
  • pan locus tag?: SAUPAN006530000
  • symbol: JSNZ_000028
  • pan gene symbol?: —
  • synonym:
  • product: AAA family ATPase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000028
  • symbol: JSNZ_000028
  • product: AAA family ATPase
  • replicon: chromosome
  • strand: -
  • coordinates: 35452..37356
  • length: 1905
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAAAAACAATTGGGAAAAAGTAGATCTAATTGGTATTCTTGCCACAGAAGAAGAAATT
    AGCAAAGTGTATAATAAAGAAAATATTTTCATAAACTCTAATGATTTTATTCAATTTTAC
    ATAAAACTAATATCAACAACACCCTATGATTATCCAAATTTAGATAATAAAACTAAGTAT
    ATAGCTTGCTTTTCAACTAGCTTATATGATTTATATAAAGATGATACAAGTAAATCTCAA
    GCTGAAAGAATAAATGACTTTTATAATTTTATACATGATAAGTTTGTTTGCTTAAATGTA
    GAACAAAAAGAAGATTATACAATTCTTAACAAATATTTTTATAATGGTCATATTAAACAA
    GTATTACCTCGACCATCAAAAATTGAGTATACGGATGTATTGCACCCAGTACCAATATTC
    AATAAAAGTAATGCATCAAAAGATATAGATAGTTTTTTAAATGATTTGTCTGAAAATTTT
    ATATTTAGAAATAATCCTTATGTGTCCAAAGAATTAGATGATACTCCTGAAGTGATTTTT
    TATGAAAAGGATAATGGCGACATATATGCGATTGGAGAAATTAAATCATTTGATTTTAAT
    GAAGACAGTGGTATTTCATTTAATTTTGACGAAAAAATATGTTTTACCAAATTAGAGGAT
    GAAGATTACAAACATTTAATTACAAATAAAAATAACGTAGCATTTATAACAACTACTTTA
    ATTCAAAAAATTGAAAGCATAATTTTAAGAGAGACCGAAAATATTATTGAACTTGATACT
    GATAAAAAAGCTAAAAAAGATAAGCTAGAAGAAAAATTCTTAAATCATTTTATAGATAAA
    CTTACTAATGAAAATTTAGTTTATAGTATAAAAGACATATTGAATTTTCACACCGCTATG
    AAGACATCAAAATTAGTTATATTATCAGGAATGAGCGGTACAGGAAAATCAAAATTGATT
    AAAGCATATGCAAACGCTTTAGGTTTAAAAGATAATTTTAAATTTATACCAGTTAGTCCT
    AGCTGGACAGAAGATTCAGACATTATTGGGTATGCCGATACATTAAATATGATATATAGA
    CCTGATGATCATGGTTTAATAGAAACCCTCATCCAAGCAAAACTTAATCCTGATAAATTA
    TTTATAGTTTGCTTTGATGAAATGAACCTAGCTCGTATAGAACATTACTTTTCTCAGTTT
    TTATCTTTGTTAGAATCAGATGTAGAAAATCGTAAATTGCAATTATATAATAAGGAATTA
    GGTGGTAAACTTTATAATTCTTCTAAATATAATCATGAAATTACTATTGGAAAAAATGTG
    AGATTTGTAGGTACTGTCAATATAGATGAATCTACACACCATTTTTCAAACAAAGTATTG
    GATAGAGCTGATCTAATAACTCTCGAAGTAATGCCGTTTAAACAATTAATTAAAATTGCT
    AACACTGAAAAAATCAAAACTACAGAAGGTATTTCTTTCGAACAAGAGTATATTGAAAGT
    TTCTTTAAAAATAGCAAAACTATTGATTTAAATAATGACACTATTGAATTTTTACAAGAA
    ATGCACAACACTCTGTTAACTATAAACAATCAATCTGGTATAGGGCCTAGGGTTATAAAA
    CATATTGATTACTACTTAAAAAATATTCCTAATTATAATGACATCTTAAGTTATGGAGAA
    GGTTTAGACTTTCAAGTTATCCAGAGAATTTTATCAAAAATCAGAGGTTCAAGAGAAGAG
    CTTGAATTTTTAATAGGTTCATATAACCCTGATAACAATTCAGTAACTTCTTCTAATTTA
    TTATCATTAATGGATAAGTACCAAAGTATTTCTGATTTCACAAATTCTAGAAAGGTAATT
    TTAAACAAATCTAAGGAGTTATATATAAATGGATTTACATTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1905

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000028
  • symbol: JSNZ_000028
  • description: AAA family ATPase
  • length: 634
  • theoretical pI: 5.02248
  • theoretical MW: 73654.9
  • GRAVY: -0.428707

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 18.4)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein YjeE (TIGR00150; HMM-score: 17.8)
    and 3 more
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 12.8)
    Genetic information processing Protein synthesis Translation factors ribosome small subunit-dependent GTPase A (TIGR00157; EC 3.6.-.-; HMM-score: 11.9)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 11.8)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 26.8)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 23.2)
    and 10 more
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 19.3)
    AAA_22; AAA domain (PF13401; HMM-score: 18)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 17.4)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 17.2)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 17)
    AAA_30; AAA domain (PF13604; HMM-score: 16.9)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 16.1)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 13.7)
    no clan defined DUF5601; Domain of unknown function (DUF5601) (PF18151; HMM-score: 11.2)
    P-loop_NTPase (CL0023) AAA_14; AAA domain (PF13173; HMM-score: 10.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.2219
    • Cytoplasmic Membrane Score: 0.1308
    • Cell wall & surface Score: 0.009
    • Extracellular Score: 0.6383
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.019565
    • TAT(Tat/SPI): 0.000252
    • LIPO(Sec/SPII): 0.003029
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKNNWEKVDLIGILATEEEISKVYNKENIFINSNDFIQFYIKLISTTPYDYPNLDNKTKYIACFSTSLYDLYKDDTSKSQAERINDFYNFIHDKFVCLNVEQKEDYTILNKYFYNGHIKQVLPRPSKIEYTDVLHPVPIFNKSNASKDIDSFLNDLSENFIFRNNPYVSKELDDTPEVIFYEKDNGDIYAIGEIKSFDFNEDSGISFNFDEKICFTKLEDEDYKHLITNKNNVAFITTTLIQKIESIILRETENIIELDTDKKAKKDKLEEKFLNHFIDKLTNENLVYSIKDILNFHTAMKTSKLVILSGMSGTGKSKLIKAYANALGLKDNFKFIPVSPSWTEDSDIIGYADTLNMIYRPDDHGLIETLIQAKLNPDKLFIVCFDEMNLARIEHYFSQFLSLLESDVENRKLQLYNKELGGKLYNSSKYNHEITIGKNVRFVGTVNIDESTHHFSNKVLDRADLITLEVMPFKQLIKIANTEKIKTTEGISFEQEYIESFFKNSKTIDLNNDTIEFLQEMHNTLLTINNQSGIGPRVIKHIDYYLKNIPNYNDILSYGEGLDFQVIQRILSKIRGSREELEFLIGSYNPDNNSVTSSNLLSLMDKYQSISDFTNSRKVILNKSKELYINGFTF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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