From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000034
  • pan locus tag?: SAUPAN000382000
  • symbol: JSNZ_000034
  • pan gene symbol?: —
  • synonym:
  • product: tRNA dihydrouridine synthase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000034
  • symbol: JSNZ_000034
  • product: tRNA dihydrouridine synthase
  • replicon: chromosome
  • strand: -
  • coordinates: 41512..42498
  • length: 987
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAGAAAATTTTTGGAGTGAATTACCACGTCCATTTTTTATTTTGGCGCCAATGGAA
    GACGTTACAGATATCGTATTTCGACACGTTGTAAGTGAAGCAGCTAGACCGGATGTGTTT
    TTCACTGAATTTACAAATACTGAAAGCTTTTGCCACCCTGAAGGCATACATAGTGTGCGT
    GGACGCTTAACTTTTAGCGAAGATGAACAGCCGATGGTCGCTCATATATGGGGAGATAAG
    CCAGAACAGTTCCGTGAAACGAGTATTCAACTAGCTAAAATGGGCTTTAAAGGCATAGAC
    TTAAATATGGGATGTCCTGTAGCAAATGTTGCTAAAAAGGGTAAGGGTTCCGGCTTAATC
    TTAAGACCTGACGTTGCTGCCGAAATTATTCAAGCGACTAAAGCAGGTGGGCTTCCGGTA
    AGTGTTAAAACACGCCTTGGCTACTATGAAATCGATGAATGGAAAGATTGGTTGAAGCAC
    GTCTTCGAACAAGACATTGCCAATTTATCTATTCATCTTCGTACACGTAAAGAAATGAGT
    AAAGTAGATGCACATTGGGAATTAATCGAAGCTATTAAAAATTTACGTGACGAAATTGCA
    CCAAATACATTGTTAACAATTAACGGTGATATTCCCGATAGAAAAACAGGACTTGAACTG
    GCAGAAAAATATGGCATTGATGGCGTCATGATTGGTAGAGGCATTTTCCACAATCCATTC
    GCTTTTGAAAAAGAACCACGTGAACACACAAGCAAAGAACTATTAGATCTGTTGAGATTG
    CATCTATCATTGTTTAACAAATATGAGAAAGATGAAATACGACAATTCAAGAGCTTGCGT
    AGATTCTTTAAAATCTATGTGCGTGGCATAAGAGGCGCTAGCGAACTTCGTCATCAATTG
    ATGAACACACAATCAATTGCAGAAGCAAGAGCACTTCTAGATGAATTTGAAGCCCAAATG
    GACGAAGACGTTAAAATAGAATTGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    987

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000034
  • symbol: JSNZ_000034
  • description: tRNA dihydrouridine synthase
  • length: 328
  • theoretical pI: 6.14939
  • theoretical MW: 37767.1
  • GRAVY: -0.37561

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General putative TIM-barrel protein, nifR3 family (TIGR00737; HMM-score: 162.1)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA dihydrouridine synthase A (TIGR00742; EC 1.-.-.-; HMM-score: 91.2)
    dihydroorotate dehydrogenase family protein (TIGR01037; EC 1.3.-.-; HMM-score: 19.2)
    Unknown function General putative TIM-barrel protein (TIGR00736; HMM-score: 15.4)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    TIM_barrel (CL0036) Dus; Dihydrouridine synthase (Dus) (PF01207; HMM-score: 165.8)
    and 2 more
    GT-B (CL0113) Glycos_transf_1; Glycosyl transferases group 1 (PF00534; HMM-score: 14.7)
    UBA (CL0214) UBA_NBR1_C; Next to BRCA1 gene 1 protein-like, C-terminal UBA domain (PF24932; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9892
    • Cytoplasmic Membrane Score: 0.0012
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0096
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012815
    • TAT(Tat/SPI): 0.000398
    • LIPO(Sec/SPII): 0.000437
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=JSNZ_000034&oldid=105676"