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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000382000
- symbol?: —
- description?: tRNA-dihydrouridine synthase
- tRNA-dihydrouridine synthase
- putative tRNA-dihydrouridine synthase
- dihydrouridine synthase (Dus) family protein
- nitrogen regulation protein NIFR3
- tRNA dihydrouridine synthase B
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 391879..392865
- synteny block?: BlockID0001730
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0089
08BA02176:
C248_0078
11819-97:
MS7_0083 (dus)
6850:
RSAU_000036 (dus)
71193:
ST398NM01_0103
ECT-R 2:
ECTR2_47
ED133:
SAOV_0041
ED98:
SAAV_0037
HO 5096 0412:
SAEMRSA15_00530
JH1:
SaurJH1_0079
JH9:
SaurJH9_0077
JKD6008:
SAA6008_00075 (dus)
JKD6159:
SAA6159_00068 (dus)
LGA251:
SARLGA251_00690
M013:
M013TW_0076
MRSA252:
SAR0099
MSHR1132:
SAMSHR1132_00650
MSSA476:
SAS0059
Mu3:
SAHV_0088
Mu50:
SAV0089
MW2:
MW0059
RF122:
SAB0033c
ST398:
SAPIG0103
T0131:
SAT0131_00075
TCH60:
HMPREF0772_10401
TW20:
SATW20_01080
USA300_TCH1516:
USA300HOU_0096
VC40:
SAVC_00170
⊟Genome Viewer[edit | edit source]
| COL chromosome | |
| N315 chromosome | |
| NCTC8325 chromosome | |
| Newman chromosome | |
| USA300_FPR3757 chromosome |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ------------------MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
N315 MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
NCTC8325 ------------------MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
Newman MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
USA300_FPR3757 ------------------MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
******************************************
COL GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
N315 GRLTFSEDEHPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
NCTC8325 GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
Newman GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
USA300_FPR3757 GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
*********:**************************************************
COL LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
N315 LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
NCTC8325 LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
Newman LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
USA300_FPR3757 LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
************************************************************
COL KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
N315 KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
NCTC8325 KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
Newman KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
USA300_FPR3757 KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
************************************************************
COL AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
N315 AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
NCTC8325 AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
Newman AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
USA300_FPR3757 AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
************************************************************
COL MNTQSIAEARALLDEFEAQMDEDVKIEL
N315 MNTQSIAEARALLDEFEAQMDEDVKIEL
NCTC8325 MNTQSIAEARALLDEFEAQMDEDVKIEL
Newman MNTQSIAEARALLDEFEAQMDEDVKIEL
USA300_FPR3757 MNTQSIAEARALLDEFEAQMDEDVKIEL
****************************