⊟Summary

• pan ID^?: SAUPAN000382000
• symbol^?: —
• description^?: tRNA-dihydrouridine synthase

  descriptions from strain specific annotations:

  • tRNA-dihydrouridine synthase
  • putative tRNA-dihydrouridine synthase
  • dihydrouridine synthase (Dus) family protein
  • nitrogen regulation protein NIFR3
  • tRNA dihydrouridine synthase B
• strand^?: -
• coordinates^?: 391879..392865
• synteny block^?: BlockID0001730
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0067
N315:
SA0085
NCTC8325:
SAOUHSC_00039
Newman:
NWMN_0030
USA300_FPR3757:
SAUSA300_0089
04-02981:
SA2981_0089
08BA02176:
C248_0078
11819-97:
MS7_0083 (dus)
6850:
RSAU_000036 (dus)
71193:
ST398NM01_0103
ECT-R 2:
ECTR2_47
ED133:
SAOV_0041
ED98:
SAAV_0037
HO 5096 0412:
SAEMRSA15_00530
JH1:
SaurJH1_0079
JH9:
SaurJH9_0077
JKD6008:
SAA6008_00075 (dus)
JKD6159:
SAA6159_00068 (dus)
LGA251:
SARLGA251_00690
M013:
M013TW_0076
MRSA252:
SAR0099
MSHR1132:
SAMSHR1132_00650
MSSA476:
SAS0059
Mu3:
SAHV_0088
Mu50:
SAV0089
MW2:
MW0059
RF122:
SAB0033c
ST398:
SAPIG0103
T0131:
SAT0131_00075
TCH60:
HMPREF0772_10401
TW20:
SATW20_01080
USA300_TCH1516:
USA300HOU_0096
VC40:
SAVC_00170

⊟Genome Viewer

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ------------------MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
  N315            MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
  NCTC8325        ------------------MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
  Newman          MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
  USA300_FPR3757  ------------------MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR
                                    ******************************************
  
  COL             GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
  N315            GRLTFSEDEHPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
  NCTC8325        GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
  Newman          GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
  USA300_FPR3757  GRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLI
                  *********:**************************************************
  
  COL             LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
  N315            LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
  NCTC8325        LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
  Newman          LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
  USA300_FPR3757  LRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMS
                  ************************************************************
  
  COL             KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
  N315            KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
  NCTC8325        KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
  Newman          KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
  USA300_FPR3757  KVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPF
                  ************************************************************
  
  COL             AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
  N315            AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
  NCTC8325        AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
  Newman          AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
  USA300_FPR3757  AFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL
                  ************************************************************
  
  COL             MNTQSIAEARALLDEFEAQMDEDVKIEL
  N315            MNTQSIAEARALLDEFEAQMDEDVKIEL
  NCTC8325        MNTQSIAEARALLDEFEAQMDEDVKIEL
  Newman          MNTQSIAEARALLDEFEAQMDEDVKIEL
  USA300_FPR3757  MNTQSIAEARALLDEFEAQMDEDVKIEL
                  ****************************