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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0085 [new locus tag: SA_RS00585 ]
  • pan locus tag?: SAUPAN000382000
  • symbol: SA0085
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0085 [new locus tag: SA_RS00585 ]
  • symbol: SA0085
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 95829..96815
  • length: 987
  • essential: yes DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAGAAAATTTTTGGAGTGAATTACCACGTCCATTTTTTATTTTGGCGCCAATGGAA
    GACGTTACAGATATCGTCTTTCGACACGTTGTAAGTGAAGCAGCTAGACCGGATGTGTTT
    TTCACTGAATTTACAAATACTGAAAGCTTTTGCCACCCTGAAGGCATACATAGTGTGCGC
    GGACGCTTAACTTTTAGCGAAGATGAACACCCGATGGTCGCTCATATATGGGGAGATAAG
    CCAGAACAGTTCCGTGAAACGAGTATTCAACTAGCTAAAATGGGCTTTAAAGGCATTGAC
    TTAAATATGGGATGTCCTGTAGCAAATGTTGCTAAAAAGGGTAAGGGTTCCGGCTTAATC
    TTAAGACCGGATGTCGCTGCCGAAATTATTCAAGCAACTAAAGCAGGTGGGCTTCCGGTA
    AGTGTTAAAACACGCCTTGGCTACTATGAAATCGATGAATGGAAAGATTGGTTGAAGCAC
    GTCTTCGAACAAGATATTGCCAATTTATCTATTCATCTTCGTACACGTAAAGAAATGAGT
    AAAGTAGATGCACATTGGGAATTAATCGAAGCTATTAAAAATTTACGTGACGAAATTGCA
    CCAAATACATTGTTAACAATTAACGGTGATATTCCCGATAGAAAAACAGGACTTGAACTG
    GCAGAAAAATATGGCATCGATGGTGTCATGATTGGTAGAGGCATTTTCCATAATCCATTC
    GCTTTTGAAAAAGAACCACGCGAACACACAAGCAAGGAACTATTAGATCTATTGAGATTG
    CATTTATCATTGTTTAACAAATATGAAAAAGATGAAATACGACAATTCAAGAGCTTGCGT
    AGATTCTTTAAAATCTATGTGCGTGGCATAAGAGGCGCTAGCGAACTTCGCCATCAATTG
    ATGAACACACAATCAATTGCAGAAGCACGAGCACTTCTAGATGAATTTGAAGCCCAAATG
    GACGAAGACGTTAAAATAGAATTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    987

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0085 [new locus tag: SA_RS00585 ]
  • symbol: SA0085
  • description: hypothetical protein
  • length: 328
  • theoretical pI: 6.24812
  • theoretical MW: 37776.1
  • GRAVY: -0.374695

⊟Function[edit | edit source]

  • reaction:
    EC 1.3.1.-?  ExPASy
    5,6-dihydrouracil in tRNA + NAD(P)+ = uracil in tRNA + NAD(P)H?
  • TIGRFAM:
    Unknown function General putative TIM-barrel protein, nifR3 family (TIGR00737; HMM-score: 161.6)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA dihydrouridine synthase A (TIGR00742; EC 1.-.-.-; HMM-score: 91.8)
    dihydroorotate dehydrogenase family protein (TIGR01037; EC 1.3.-.-; HMM-score: 19.1)
    Unknown function General putative TIM-barrel protein (TIGR00736; HMM-score: 15.4)
  • TheSEED  :
    • tRNA-dihydrouridine synthase DusB2
    RNA Metabolism RNA processing and modification tRNA modification Archaea  tRNA dihydrouridine synthase B (EC 1.-.-.-)
  • PFAM:
    TIM_barrel (CL0036) Dus; Dihydrouridine synthase (Dus) (PF01207; HMM-score: 169.4)
    and 3 more
    GT-B (CL0113) Glycos_transf_1; Glycosyl transferases group 1 (PF00534; HMM-score: 15.9)
    TIM_barrel (CL0036) AP_endonuc_2; Xylose isomerase-like TIM barrel (PF01261; HMM-score: 13.5)
    no clan defined MPS2; Monopolar spindle protein 2 (PF17060; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: FMN
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 0
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013626
    • TAT(Tat/SPI): 0.000422
    • LIPO(Sec/SPII): 0.000454
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKENFWSELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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