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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS00585 [old locus tag: SA0085 ]
  • pan locus tag?: SAUPAN000382000
  • symbol: SA_RS00585
  • pan gene symbol?: —
  • synonym:
  • product: tRNA-dihydrouridine synthase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS00585 [old locus tag: SA0085 ]
  • symbol: SA_RS00585
  • product: tRNA-dihydrouridine synthase
  • replicon: chromosome
  • strand: -
  • coordinates: 95829..96761
  • length: 933
  • essential: yes DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (95829..96761) NCBI
  • BioCyc: SA_RS00585 BioCyc
  • MicrobesOnline: see SA0085

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGAAGACGTTACAGATATCGTCTTTCGACACGTTGTAAGTGAAGCAGCTAGACCGGAT
    GTGTTTTTCACTGAATTTACAAATACTGAAAGCTTTTGCCACCCTGAAGGCATACATAGT
    GTGCGCGGACGCTTAACTTTTAGCGAAGATGAACACCCGATGGTCGCTCATATATGGGGA
    GATAAGCCAGAACAGTTCCGTGAAACGAGTATTCAACTAGCTAAAATGGGCTTTAAAGGC
    ATTGACTTAAATATGGGATGTCCTGTAGCAAATGTTGCTAAAAAGGGTAAGGGTTCCGGC
    TTAATCTTAAGACCGGATGTCGCTGCCGAAATTATTCAAGCAACTAAAGCAGGTGGGCTT
    CCGGTAAGTGTTAAAACACGCCTTGGCTACTATGAAATCGATGAATGGAAAGATTGGTTG
    AAGCACGTCTTCGAACAAGATATTGCCAATTTATCTATTCATCTTCGTACACGTAAAGAA
    ATGAGTAAAGTAGATGCACATTGGGAATTAATCGAAGCTATTAAAAATTTACGTGACGAA
    ATTGCACCAAATACATTGTTAACAATTAACGGTGATATTCCCGATAGAAAAACAGGACTT
    GAACTGGCAGAAAAATATGGCATCGATGGTGTCATGATTGGTAGAGGCATTTTCCATAAT
    CCATTCGCTTTTGAAAAAGAACCACGCGAACACACAAGCAAGGAACTATTAGATCTATTG
    AGATTGCATTTATCATTGTTTAACAAATATGAAAAAGATGAAATACGACAATTCAAGAGC
    TTGCGTAGATTCTTTAAAATCTATGTGCGTGGCATAAGAGGCGCTAGCGAACTTCGCCAT
    CAATTGATGAACACACAATCAATTGCAGAAGCACGAGCACTTCTAGATGAATTTGAAGCC
    CAAATGGACGAAGACGTTAAAATAGAATTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    933

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS00585 [old locus tag: SA0085 ]
  • symbol: SA_RS00585
  • description: tRNA-dihydrouridine synthase
  • length: 310
  • theoretical pI: 6.24614
  • theoretical MW: 35571.5
  • GRAVY: -0.392581

⊟Function[edit | edit source]

  • reaction:
    EC 1.3.1.-?  ExPASy
    5,6-dihydrouracil in tRNA + NAD(P)+ = uracil in tRNA + NAD(P)H?
  • TIGRFAM:
    Unknown function General putative TIM-barrel protein, nifR3 family (TIGR00737; HMM-score: 152)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA dihydrouridine synthase A (TIGR00742; EC 1.-.-.-; HMM-score: 84.3)
    dihydroorotate dehydrogenase family protein (TIGR01037; EC 1.3.-.-; HMM-score: 19.3)
    Unknown function General putative TIM-barrel protein (TIGR00736; HMM-score: 15.6)
  • TheSEED: see SA0085
  • PFAM:
    TIM_barrel (CL0036) Dus; Dihydrouridine synthase (Dus) (PF01207; HMM-score: 160.4)
    and 3 more
    GT-B (CL0113) Glycos_transf_1; Glycosyl transferases group 1 (PF00534; HMM-score: 16.1)
    TIM_barrel (CL0036) AP_endonuc_2; Xylose isomerase-like TIM barrel (PF01261; HMM-score: 13.8)
    no clan defined MPS2; Monopolar spindle protein 2 (PF17060; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: FMN
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005888
    • TAT(Tat/SPI): 0.000452
    • LIPO(Sec/SPII): 0.001146
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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