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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000331
  • pan locus tag?: SAUPAN001976000
  • symbol: JSNZ_000331
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000331
  • symbol: JSNZ_000331
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 364119..364502
  • length: 384
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAGTTCGAATTACTTTTATTATTTTAGCAATTTTATCGACGATTGTTTGCTTGTTC
    TTAGCAGCCATGCATCCAACAGGACCAAACACAGTAACTTTTGAACAGCCATATTTATTC
    ACCCTCAACATCATTATAATGGTATTAGTCGCATTACCTTCACTTGTTTTAGCTATATAT
    GATTATATGAGTTTTAGAATTTCTTCTGCTATTTTACAATTTCTAGGGGCTGTCTCTTGG
    TTCTTTTTATCATTGATATTATCGCTCACACAATTTACACCTTTTACATTAGCGTCATTT
    ATAACTTCAATTATTTTGTTCGCAAGCACAATTATCACATTAGCTATTGGTGGTAAGTCT
    GTTGATAAGAATGATTCCCATTAA
    60
    120
    180
    240
    300
    360
    384

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000331
  • symbol: JSNZ_000331
  • description: hypothetical protein
  • length: 127
  • theoretical pI: 8.49172
  • theoretical MW: 14009.8
  • GRAVY: 1.2063

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Electron transport caa(3)-type oxidase, subunit IV (TIGR02229; HMM-score: 6.9)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined Herpes_LMP1; Herpesvirus latent membrane protein 1 (LMP1) (PF05297; HMM-score: 8.1)
    Gaa1; Gaa1-like, GPI transamidase component (PF04114; HMM-score: 7.2)
    and 1 more
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9918
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0081
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.165109
    • TAT(Tat/SPI): 0.003325
    • LIPO(Sec/SPII): 0.376102
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAVSWFFLSLILSLTQFTPFTLASFITSIILFASTIITLAIGGKSVDKNDSH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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