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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0368 [new locus tag: NWMN_RS02085 ]
  • pan locus tag?: SAUPAN001976000
  • symbol: NWMN_0368
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0368 [new locus tag: NWMN_RS02085 ]
  • symbol: NWMN_0368
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 415758..416150
  • length: 393
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGATCATGATGAAAGTTCGAATTACTTTTATTATTTTAGCAATTTTATCGACGATTGTT
    TGCTTGTTCTTAGCAGCAATGCATCCAACAGGACCAAACACAGTAACTTTTGAACAGCCA
    TATTTATTCACCCTCAACATCATTATAATGGTATTAGTCGCATTACCTTCACTTGTTTTA
    GCTATATATGATTATATGAGTTTTAGAATTTCTTCTGCTATTTTACAATTTCTAGGGGCT
    ATCTCTTGGTTCTTTTTATCATTGATATTATCGCTCACACAATTTACACCTTTTACATTA
    GCGTCATTTATAACTTCAATTATTTTGTTCACAAGCACAATTATCACATTAGCCATTGGT
    GGTAAGTCTGTTGAAAAGAATGATTCCCCTTAA
    60
    120
    180
    240
    300
    360
    393


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0368 [new locus tag: NWMN_RS02085 ]
  • symbol: NWMN_0368
  • description: hypothetical protein
  • length: 130
  • theoretical pI: 8.48433
  • theoretical MW: 14403.4
  • GRAVY: 1.23769

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Electron transport caa(3)-type oxidase, subunit IV (TIGR02229; HMM-score: 14.7)
  • TheSEED  :
    • FIG01108271: hypothetical protein
  • PFAM:
    no clan defined HRG; Haem-transporter, endosomal/lysosomal, haem-responsive gene (PF16954; HMM-score: 12.4)
    and 3 more
    Herpes_LMP1; Herpesvirus latent membrane protein 1 (LMP1) (PF05297; HMM-score: 6)
    Gaa1; Gaa1-like, GPI transamidase component (PF04114; HMM-score: 5.6)
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.9706
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0287
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.094732
    • TAT(Tat/SPI): 0.002794
    • LIPO(Sec/SPII): 0.269898
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIMMKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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