Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_0368 [new locus tag: NWMN_RS02085 ]
- pan locus tag?: SAUPAN001976000
- symbol: NWMN_0368
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_0368 [new locus tag: NWMN_RS02085 ]
- symbol: NWMN_0368
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 415758..416150
- length: 393
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330202 NCBI
- RefSeq: YP_001331402 NCBI
- BioCyc:
- MicrobesOnline: 3705899 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGATCATGATGAAAGTTCGAATTACTTTTATTATTTTAGCAATTTTATCGACGATTGTT
TGCTTGTTCTTAGCAGCAATGCATCCAACAGGACCAAACACAGTAACTTTTGAACAGCCA
TATTTATTCACCCTCAACATCATTATAATGGTATTAGTCGCATTACCTTCACTTGTTTTA
GCTATATATGATTATATGAGTTTTAGAATTTCTTCTGCTATTTTACAATTTCTAGGGGCT
ATCTCTTGGTTCTTTTTATCATTGATATTATCGCTCACACAATTTACACCTTTTACATTA
GCGTCATTTATAACTTCAATTATTTTGTTCACAAGCACAATTATCACATTAGCCATTGGT
GGTAAGTCTGTTGAAAAGAATGATTCCCCTTAA60
120
180
240
300
360
393
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_0368 [new locus tag: NWMN_RS02085 ]
- symbol: NWMN_0368
- description: hypothetical protein
- length: 130
- theoretical pI: 8.48433
- theoretical MW: 14403.4
- GRAVY: 1.23769
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism Electron transport caa(3)-type oxidase, subunit IV (TIGR02229; HMM-score: 14.7)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: GPCR_A (CL0192) Per1; Per1-like family (PF04080; HMM-score: 6)no clan defined Herpes_LMP1; Herpesvirus latent membrane protein 1 (LMP1) (PF05297; HMM-score: 6)Gaa1; Gaa1-like, GPI transamidase component (PF04114; HMM-score: 5.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0
- Signal peptide possibility: 0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.094732
- TAT(Tat/SPI): 0.002794
- LIPO(Sec/SPII): 0.269898
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIMMKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.