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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0448 [new locus tag: SACOL_RS02265 ]
- pan locus tag?: SAUPAN001976000
- symbol: SACOL0448
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0448 [new locus tag: SACOL_RS02265 ]
- symbol: SACOL0448
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 450084..450467
- length: 384
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3236491 NCBI
- RefSeq: YP_185338 NCBI
- BioCyc: see SACOL_RS02265
- MicrobesOnline: 911918 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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361ATGAAAGTTCGAATTACTTTTATTATTTTAGCAATTTTATCGACGATTGTTTGCTTGTTC
TTAGCAGCAATGCATCCAACAGGACCAAACACAGTAACTTTTGAACAGCCATATTTATTC
ACCCTCAACATCATTATAATGGTATTAGTCGCATTACCTTCACTTGTTTTAGCTATATAT
GATTATATGAGTTTTAGAATTTCTTCTGCTATTTTACAATTTCTAGGGGCTATCTCTTGG
TTCTTTTTATCATTGATATTATCGCTCACACAATTTACACCTTTTACATTAGCGTCATTT
ATAACTTCAATTATTTTGTTCACAAGCACAATTATCACATTAGCCATTGGTGGTAAGTCT
GTTGAAAAGAATGATTCCCCTTAA60
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384
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0448 [new locus tag: SACOL_RS02265 ]
- symbol: SACOL0448
- description: hypothetical protein
- length: 127
- theoretical pI: 8.48433
- theoretical MW: 14027.8
- GRAVY: 1.20157
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism Electron transport caa(3)-type oxidase, subunit IV (TIGR02229; HMM-score: 7.7)
- TheSEED :
- FIG01108271: hypothetical protein
- PFAM: no clan defined Herpes_LMP1; Herpesvirus latent membrane protein 1 (LMP1) (PF05297; HMM-score: 6.9)Gaa1; Gaa1-like, GPI transamidase component (PF04114; HMM-score: 5.8)and 1 moreDUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 4.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.165109
- TAT(Tat/SPI): 0.003325
- LIPO(Sec/SPII): 0.376101
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.