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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000352
  • pan locus tag?: SAUPAN002101000
  • symbol: JSNZ_000352
  • pan gene symbol?: —
  • synonym:
  • product: DUF1304 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000352
  • symbol: JSNZ_000352
  • product: DUF1304 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 385636..385995
  • length: 360
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    GTGAATATCATCTCAACAATTTTAATCATATTTGTGGCATTAGAGTTTTTCTATATTATG
    TACCTTGAAACGATTGCTACAACTTCCAAAAAGACTAGCGAGACATTTAATATAAGCGTC
    GATAAATTGAAAGACAAAAATATTAACCTACTTTTGAAGAACCAAGGCATATATAACGGT
    TTAATCGGAATTTTGCTAATATACGGTTTGTTTATCAGCAGTAATCCAAAAGAAATATGC
    GCAGCTATTTTAGTGTATATCATTGGCGTTGCTATTTATGGTGGCCTTTCAAGCAATATT
    AGTATCTTTTTCAAACAAGGCACATTGCCAGTATTGGCACTCATATCAATGCTTTGGTAA
    60
    120
    180
    240
    300
    360

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000352
  • symbol: JSNZ_000352
  • description: DUF1304 domain-containing protein
  • length: 119
  • theoretical pI: 8.98034
  • theoretical MW: 13215.8
  • GRAVY: 0.907563

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Hypoth_1 (CL0447) DUF1304; Protein of unknown function (DUF1304) (PF06993; HMM-score: 106.9)
    and 3 more
    no clan defined DUF6249; Domain of unknown function (DUF6249) (PF19762; HMM-score: 15.7)
    PDDEXK (CL0236) RecU; Recombination protein U (PF03838; HMM-score: 13.2)
    no clan defined PsiE; Phosphate-starvation-inducible E family (PF06146; HMM-score: 9.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9851
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0148
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.100246
    • TAT(Tat/SPI): 0.00038
    • LIPO(Sec/SPII): 0.048184
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNIISTILIIFVALEFFYIMYLETIATTSKKTSETFNISVDKLKDKNINLLLKNQGIYNGLIGILLIYGLFISSNPKEICAAILVYIIGVAIYGGLSSNISIFFKQGTLPVLALISMLW

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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