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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000586
  • pan locus tag?: SAUPAN002488000
  • symbol: JSNZ_000586
  • pan gene symbol?: —
  • synonym:
  • product: DMT family transporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000586
  • symbol: JSNZ_000586
  • product: DMT family transporter
  • replicon: chromosome
  • strand: -
  • coordinates: 621794..622723
  • length: 930
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCTTCTTTTCTATATCATTGGTGTCCTAGTTGGAATGCTTATTCCTATCCAAACATCT
    GTCAATTCAAGACTATCACTGTATACTAAATCGCCTTTCTATACTTCATTCATTTCATTT
    TCAGTTGGAACAATTTGTTTAATTATTTTAAATATCATTATCAATCCAGAAGTATTTACT
    ATTCACTTTTACAATAATCAATCATTTAACTACACATGGGTAGTCGGTGGTTTGCTTGGG
    GTTAGCTTTTTAACTGGCAATTTATTGTTATTGCCAAAATTAGGTGCAACATTAACTGTA
    ATTGCAACAGTTGCGGGTCAAATTATTATGGGTGTCATTATTGATACATTTGGCTTATTT
    GGCGCTACAATTCATGATTTTAATTTAATTAAAGCAATTGGAGTATTGTTACTCATTGTC
    GGCATCGTCATAATGAATCAATTTAACAAGAATAATTTATTACTAACTGATCAAAAGTAT
    TTACTGTTTTGGCTTCTCTTAGGATTTATTTTTGGTTTCTTTCCACCTATTCAAACGACA
    ATTAATAGTGCTTTAGCAAGTCATACTCATTCACCAGCCTTTGCATCATTAGTATCATTT
    ACAATTGGGTCAATAACGCTATTGATTTTAACCGCTATTTTTAATCGTTCTTTAAAACTA
    AAAACAAGTCATTTAAAATTCGGTAAATTAAAGCCTATCTATTTTACTGGCGGTATACTT
    GGTATGGCTTTTGTAACAGCTAACATTATCTTAATGCCTCATATGGGTGCAGCATTAACA
    ACACTTATTGGGATGTTTGGCCAGATTCTAATGGGCATATTGATAGATCACTTTGGATTA
    TTTAGTTCACCTAAAATAGCAATGACATCCAGAAAAACTATTGGTCTATTATGTATTTTG
    ACAGGCATTATACTTTTAAGATTATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    930

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000586
  • symbol: JSNZ_000586
  • description: DMT family transporter
  • length: 309
  • theoretical pI: 10.3925
  • theoretical MW: 33787.6
  • GRAVY: 1.06861

⊟Function[edit | edit source]

  • TIGRFAM:
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 5.7)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    DMT (CL0184) DMT_YdcZ; Putative inner membrane exporter, YdcZ (PF04657; HMM-score: 245.8)
    and 1 more
    SLATT (CL0676) SLATT_6; SMODS and SLOG-associating 2TM effector domain 6 (PF18169; HMM-score: 6.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0001
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.181826
    • TAT(Tat/SPI): 0.001486
    • LIPO(Sec/SPII): 0.031405
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSITLLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFSSPKIAMTSRKTIGLLCILTGIILLRLF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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