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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000606
  • pan locus tag?: SAUPAN002515000
  • symbol: tarB
  • pan gene symbol?: tagB
  • synonym:
  • product: teichoic acid glycerol-phosphate primase TarB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000606
  • symbol: tarB
  • product: teichoic acid glycerol-phosphate primase TarB
  • replicon: chromosome
  • strand: +
  • coordinates: 640554..641657
  • length: 1104
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAACGTTTTAATAAAGAAATTTTATCATTTGGTAGTTCGAATACTTTCTAAAATGATT
    ACGCCTCAAGTGATTGATAAACCGCATATCGTATTTATGATGACTTTTCCAGAAGATATT
    AAACCTATTATCAAAGCATTAAATAATTCGTCGTATCAGAAAACTGTTTTAACAACACCA
    AAACAAGCGCCTTATTTATCTGATCTTAGCGACGATGTTGATGTGATAGAAATGACTAGT
    CGAACATTGGTAAAACAAATTAAGGCTTTGAAAAGCGCGCAGATGATTATTATCGATAAT
    TATTACCTATTACTAGGTGGATATAATAAGACTTCTAATCAACACATTGTTCAAACGTGG
    CATGCAAGTGGTGCATTAAAAAACTTTGGATTAACAGATCATCAAGTCGATTTGTCTGAC
    AAGGGAATGGTTCAGCAGTACCGTAAAGTTTATCAAGCGACGGATTTTTACTTAGTGGGT
    TGTGAACAAATGTCACAATGTTTTAAACAGTCTTTAGGTGCAACAGAAGAGCAAATGCTG
    TATTTTGGGCTTCCGAGAATCAATAAATATTACACAGCTGATAGAGCAACGGTTAAGGCA
    GAGTTAAAGGATAAATATGGAATTACAAATAAGTTGGTATTATATGTACCAACATATAGA
    GAAGATAAAGCAGATAATAGGGCTATTGATAAAGCTTATTTTGAAAAATGTTTACCAGGA
    TATACACTGATTAATAAATTACATCCATCAATTGAAGATTCAGACATTGATGACGTATCT
    TCAATCGACACGTCTACATTAATGCTAATGTCAGATATAATTATTAGCGACTATAGTTCG
    CTGCCAATAGAAGCTAGCTTGTTAGATATTCCAACTATATTTTATGTGTATGATGAAGGA
    ACATATGATAAAGTGAGAGGCCTGAATCAATTTTACAAAGCAATACCGGATAGCTACAAA
    GTGTATACTGAAGAAGATTTAATAATGACGATACAAGAAAAAGAACATCTATTAAGTCCG
    TTATTTAAAGATTGGCATAAGTATAATACTGATAAAAGTTTACATCAGCTCACAGAATAT
    ATAGATAAGATGGTGACAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1104

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000606
  • symbol: TarB
  • description: teichoic acid glycerol-phosphate primase TarB
  • length: 367
  • theoretical pI: 6.42819
  • theoretical MW: 42394.5
  • GRAVY: -0.291826

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.8.44?  ExPASy
    Teichoic acid glycerol-phosphate primase CDP-glycerol + N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol = CDP + 4-O-((2R)-1-glycerophospho)-N-acetyl-beta-D-mannosaminyl-(1->4)-N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol
  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides surface carbohydrate biosynthesis protein (TIGR04396; HMM-score: 20.1)
  • TheSEED: data available for COL, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    GT-B (CL0113) Glyphos_transf; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase (PF04464; HMM-score: 153.5)
    and 1 more
    P-loop_NTPase (CL0023) AAA_25; AAA domain (PF13481; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4986
    • Cytoplasmic Membrane Score: 0.4914
    • Cell wall & surface Score: 0.001
    • Extracellular Score: 0.0091
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.042535
    • TAT(Tat/SPI): 0.000286
    • LIPO(Sec/SPII): 0.000808
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNVLIKKFYHLVVRILSKMITPQVIDKPHIVFMMTFPEDIKPIIKALNNSSYQKTVLTTPKQAPYLSDLSDDVDVIEMTSRTLVKQIKALKSAQMIIIDNYYLLLGGYNKTSNQHIVQTWHASGALKNFGLTDHQVDLSDKGMVQQYRKVYQATDFYLVGCEQMSQCFKQSLGATEEQMLYFGLPRINKYYTADRATVKAELKDKYGITNKLVLYVPTYREDKADNRAIDKAYFEKCLPGYTLINKLHPSIEDSDIDDVSSIDTSTLMLMSDIIISDYSSLPIEASLLDIPTIFYVYDEGTYDKVRGLNQFYKAIPDSYKVYTEEDLIMTIQEKEHLLSPLFKDWHKYNTDKSLHQLTEYIDKMVTK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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