Jump to navigation
Jump to search
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000852
- pan locus tag?: SAUPAN002976000
- symbol: JSNZ_000852
- pan gene symbol?: —
- synonym:
- product: DUF4355 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000852
- symbol: JSNZ_000852
- product: DUF4355 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 857533..858153
- length: 621
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601ATGGAAGAAAATAAACTTAAGTTTAATTTGCAATTTTTTGCAGACCAATCAGATGATCCG
GACGAACCAGGCGGAGATGGTAAAAAAGGAAATCCTGATAAGAAAGAATATGACGAAGGT
ACTGAAATAACTTTCACGCCAGAGCAACAAAAGAAAGTTGATGAAATACTTGAACGTCGT
GTAGCCCACGAAAAGAAAAAAGCTGATGAGTATGCAAAAGAAAAAGCAGAAGAAGCCGCT
AAAGAAGCTGCTAAATTAGCGAAAATGAACAAGGATCAAAAAGATGAATATGAACGCAAA
CAATTGGAAAAAGAGCTGGAGCAATTACGCTCAGAAAAACAATTAAATGAAATGCGTTCA
GAAGCAAGGAAAATGTTAAGCGAAGCAGAAGTTGATTCATCAGACGAGGTTGTTAATTTA
GTTGTAACAGATACTGCTGAACAAACTAAATTGAATGTTGAAGCTTTTTCTAATGCAGTA
AAAAAAGCGGTTAATGAAGCGGTTAAGGTTAACGCTAGACAATCGCCATTGACTGGTGGA
GATTCATTTAATCACTCATCTAAAAACAAACCACAAAACTTAGCTGAAATAGCTAGACAA
AAAAGAATTATTAAAAATTAA60
120
180
240
300
360
420
480
540
600
621
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000852
- symbol: JSNZ_000852
- description: DUF4355 domain-containing protein
- length: 206
- theoretical pI: 5.04807
- theoretical MW: 23470.9
- GRAVY: -1.26068
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: no clan defined DUF4355; Capsid assembly scaffolding protein Gp46 (PF14265; HMM-score: 99)and 6 morePrmC_N; PrmC N-terminal domain (PF17827; HMM-score: 16.7)Amnionless; Amnionless (PF14828; HMM-score: 11)Peptidase_PA (CL0124) Peptidase_S46; Peptidase S46 (PF10459; HMM-score: 10.5)no clan defined AbiH; Bacteriophage abortive infection AbiH (PF14253; HMM-score: 9.8)DUF4011; Protein of unknown function (DUF4011) (PF13195; HMM-score: 8.5)GT-B (CL0113) FUT8_N_cat; Alpha-(1,6)-fucosyltransferase N- and catalytic domains (PF19745; HMM-score: 7.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9724
- Cytoplasmic Membrane Score: 0.0012
- Cell wall & surface Score: 0.0163
- Extracellular Score: 0.0102
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004782
- TAT(Tat/SPI): 0.001302
- LIPO(Sec/SPII): 0.001915
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MEENKLKFNLQFFADQSDDPDEPGGDGKKGNPDKKEYDEGTEITFTPEQQKKVDEILERRVAHEKKKADEYAKEKAEEAAKEAAKLAKMNKDQKDEYERKQLEKELEQLRSEKQLNEMRSEARKMLSEAEVDSSDEVVNLVVTDTAEQTKLNVEAFSNAVKKAVNEAVKVNARQSPLTGGDSFNHSSKNKPQNLAEIARQKRIIKN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000850 > JSNZ_000851 > JSNZ_000852 > JSNZ_000853 > JSNZ_000854 > JSNZ_000855 > JSNZ_000856 > JSNZ_000857 > JSNZ_000858 > JSNZ_000859
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)