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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000870
  • pan locus tag?: SAUPAN002997000
  • symbol: JSNZ_000870
  • pan gene symbol?: —
  • synonym:
  • product: glucosaminidase domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000870
  • symbol: JSNZ_000870
  • product: glucosaminidase domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 873363..875261
  • length: 1899
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGGGATTACCTAATCCGAAAAATAGAAAGCCCACAGCTAGTGAAGTGGTTGAATGGGCG
    TTATATATCGCTAAAAACAAAATAGCTATTGATGTACCTGGTTCTGGAATGGGAGCACAA
    TGCTGGGATTTACCTAATTATTTACTCGATAAATATTGGGGATTTAGAACATGGGGAAAT
    GCTGATGCTATGGCTCAGAAATCTAATTATAGAGGTAGAGATTTCAAGATAATTAGAAAT
    ACAAAAGACTTTGTACCACAACCAGGCGACTGGGGTGTTTGGACTGGTGGTTGGGCAGGT
    CATGTGAACATTGTAGTAGGGCCATGCACAAAAGACTATTGGTATGGTGTGGATCAAAAC
    TGGTATACAAATAATGCAACAGGAAGTCCGCCGTATAAAATCAAACACTCTTATCATGAT
    GGACCAGGTGGAGGAGTTAAATATTTTGTTAGACCACCATATCATCCGGAGAAATCTACG
    CCGGCACCTAAACCAGAAGATGATAGTGATGATAACGAAAAAAATAATAAAAAAGTTCCA
    ATTTGGAAAGATGTAACAACTATAAAGTACACTATTTCTAGCCAAGAGGTTAATTATCCA
    GAATATATTTATCACTTTATAGTAGAAGGTAATCGACGACTCGAAAAACCTAAAGGAATA
    ATGATTAGAAACGCACAAACGATGAGCTCGGTAGAAAGTTTATATAACAGTAGGAAGAAA
    TACAAACAGGATGTAGAATATCCCCACTTTTATGTTGACAGACATAATATTTGGGCACCT
    AGAAGAGCTGTATTTGAAGTTCCTAATGAACCTGATTATATAGTTATAGACGTATGTGAA
    GATTATAGTGCGAGTAAAAATGAATTTATTTTTAATGAGATTCACGCAATGGTTGTAGCT
    GTAGATATGATGGCCAAATATGAGATACCTCTAAGTATTGAAAATTTAAAAGTAGACGAC
    AGCATTTGGCGTTCGATGTTGGAACATGTTAATTGGAATATGATTGACAACGGTGTTCCC
    CCTAAAGATAAATACGAAGCATTAGAAAAGGCATTACTTAATATATTTAAAAACAGAGAA
    AAATTATTAAATTCTATAACTAAACCAACAGTAACAAAATCTAGAATAAAAGTTATGGTA
    GATAATAAAAACGCTGATATAGCGAATGTAAGAGACTCATCACCAACAGCTAATAATGGC
    TCGGCATCTAAACAACCGCAGATCATAACAGAAACGAGTCCTTATACATTCAAACAAGCA
    CTGGATAAACAAATGGCAAGAGGTAACCCGAAAAAATCTAATGCTTGGGGTTGGGCTAAC
    GCTACACGAGCACAAACGAGTTCAGCAATGAATGTTAAACGAATATGGGAAAGTAACACG
    CAGTGCTACCAAATGCTTAATTTAGGCAAGTATCAAGGCGTTTCAGTTAGTTCGCTTAAT
    AAGATACTTAAAGGTAAGGGGACATTGAATAATCAAGGTAAAGCGTTCGCAGAAGCTTGT
    AAAAAGCACAACATTAATGAAATTTATTTAATCGCGCATGCTTTCTTAGAAAGTGGATAT
    GGAACAAGTAACTTCGCTAACGGAAAAGATGGAGTATACAACTACTTCGGTATTGGCGCT
    TACGACAACAATCCTAACTACGCAATGACGTTTGCTAGGAATAAAGGTTGGACATCTCCA
    GCAAAAGCAATCATGGGCGGTGCTAGCTTCGTAAGAAAGGATTACATCAACAAAGGACAG
    AATACACTGTACAGAATCAGATGGAATCCTAAGAATCCAGCTACGCACCAATACGCTACT
    GCTATAGAGTGGTGCCAACATCAAGCTAGTACAATCGCTAAGCTATATAAACAAATCGGC
    TTAAAAGGTATCTACTTTATAAGAGATAAATATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1899

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000870
  • symbol: JSNZ_000870
  • description: glucosaminidase domain-containing protein
  • length: 632
  • theoretical pI: 9.77316
  • theoretical MW: 72030.1
  • GRAVY: -0.684652

⊟Function[edit | edit source]

  • TIGRFAM:
    flagellar rod assembly protein/muramidase FlgJ (TIGR02541; HMM-score: 22)
  • TheSEED:
  • PFAM:
    Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 51.4)
    and 2 more
    SLT_2; Transglycosylase SLT domain (PF13406; HMM-score: 13.8)
    no clan defined DUF5415; Family of unknown function (DUF5415) (PF17436; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.9998
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.031405
    • TAT(Tat/SPI): 0.001237
    • LIPO(Sec/SPII): 0.002792
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGLPNPKNRKPTASEVVEWALYIAKNKIAIDVPGSGMGAQCWDLPNYLLDKYWGFRTWGNADAMAQKSNYRGRDFKIIRNTKDFVPQPGDWGVWTGGWAGHVNIVVGPCTKDYWYGVDQNWYTNNATGSPPYKIKHSYHDGPGGGVKYFVRPPYHPEKSTPAPKPEDDSDDNEKNNKKVPIWKDVTTIKYTISSQEVNYPEYIYHFIVEGNRRLEKPKGIMIRNAQTMSSVESLYNSRKKYKQDVEYPHFYVDRHNIWAPRRAVFEVPNEPDYIVIDVCEDYSASKNEFIFNEIHAMVVAVDMMAKYEIPLSIENLKVDDSIWRSMLEHVNWNMIDNGVPPKDKYEALEKALLNIFKNREKLLNSITKPTVTKSRIKVMVDNKNADIANVRDSSPTANNGSASKQPQIITETSPYTFKQALDKQMARGNPKKSNAWGWANATRAQTSSAMNVKRIWESNTQCYQMLNLGKYQGVSVSSLNKILKGKGTLNNQGKAFAEACKKHNINEIYLIAHAFLESGYGTSNFANGKDGVYNYFGIGAYDNNPNYAMTFARNKGWTSPAKAIMGGASFVRKDYINKGQNTLYRIRWNPKNPATHQYATAIEWCQHQASTIAKLYKQIGLKGIYFIRDKYK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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