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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000874
- pan locus tag?: SAUPAN003002000
- symbol: JSNZ_000874
- pan gene symbol?: —
- synonym:
- product: N-acetylmuramoyl-L-alanine amidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000874
- symbol: JSNZ_000874
- product: N-acetylmuramoyl-L-alanine amidase
- replicon: chromosome
- strand: +
- coordinates: 877281..878735
- length: 1455
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1441ATGTTGATAACAAAAAACCAAGCAGAAAAATGGTTTGATAATTCATTAGGGAAGCAGTTC
AATCCTGATTTGTTTTATGGATTTCAGTGTTACGATTACGCAAATATGTTTTTTATGATA
GCAACAGGCGAAAGGTTACAAGGTTTATACGCTTATAATATTCCATTTGATAATAAAGCA
AGGATTGAAAAATACGGGCAAATAATTAAAAACTATGATAGCTTTTTACCACAAAAGTTG
GACGTTGTCGTTTTCCCGTCGAAGTATGGTGGCGGAGCTGGACACGTTGAAATTATTGAG
AGCGCAAATTTAAACACTTTCACATCGTTTGGCCAAAATTGGAATGGTAAAGGTTGGACA
AATGGCGTTGCGCAACCTGGTTGGGGTCCTGAAACTGTTACAAGACATGTTCATTATTAC
GATGACCCAATGTATTTTATTAGATTAAATTTCCCTGACAAAGTAAGTGTTGGGGATAAA
GCTAAAAGCATTATTAAGCAAGCAACTGCCAAAAAGCAAGCAGTAATTAAACCTAAAAAA
ATTATGCTTGTAGCCGGTCATGGTTATAACGATCCTGGAGCAGTAGGAAACGGAACAAAC
GAACGCGATTTTATCCGTAAATATATAACGCCAAATATCGCTAAGTATTTAAGACATGCC
GGTCATGAAGTTGCATTATATGGTGGCTCAAGTCAATCACAAGACATGTATCAAGATACT
GCATACGGTGTTAATGTAGGAAATAATAAAGATTATGGATTATATTGGGTTAAATCACAG
GGGTATGACATTGTTCTAGAGATTCATTTAGACGCAGCAGGAGAAAATGCAAGTGGTGGG
CATGTTATTATCTCAAGTCAATTCAATGCAGATACTATTGATAAAAGTATACAAGATGTT
ATTAAAAATAACTTAGGACAAATAAGAGGTGTAACACCTCGTAATGATTTACTGAACGTT
AATGTATCAGCAGAAATAAATATCAATTATCGTTTATCTGAATTAGGTTTTATTACTAAT
AAAAAAGATATGGATTGGATTAAGAAGAATTATGACTTGTATTCTAAATTAATAGCTGGT
GCGATTCATGGTAAGCCTATAGGTGGTTTGGTAGCTGGTAATGTTAAAACATCAGCTAAA
AACCAAAAAAATCCACCAGTGCCAGCAGGTTATACACTTGATAAGAATAATGTGCCTTAT
AAAAAAGAGGCTGGTAATTACACAGTTGCCAATGTTAAAGGTAATAACGTAAGGGACGGC
TATTCAACTAATTCAAGAATTACAGGTGTATTACCTAATAACGCAACAATCAAATATGAC
GGCGCATATTGCATCAATGGCTATAGATGGATTACTTATATTTCTAATAGTGGACAACGT
CGTTATATTGCGACAGGAGAGGTAGACGAGGCAGGTAATAGAATAAGTAGTTTTGGTAAG
TTTAGTTCGGTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000874
- symbol: JSNZ_000874
- description: N-acetylmuramoyl-L-alanine amidase
- length: 484
- theoretical pI: 9.55793
- theoretical MW: 53785.1
- GRAVY: -0.484091
⊟Function[edit | edit source]
- reaction: EC 3.5.1.28? ExPASyN-acetylmuramoyl-L-alanine amidase Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides
- TIGRFAM: Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan N-acetylmuramoyl-L-alanine amidase CwlD (TIGR02883; EC 3.5.1.28; HMM-score: 43.5)Cellular processes Sporulation and germination N-acetylmuramoyl-L-alanine amidase CwlD (TIGR02883; EC 3.5.1.28; HMM-score: 43.5)
- TheSEED:
- PFAM: ZnExoPePases (CL0865) Amidase_3; N-acetylmuramoyl-L-alanine amidase (PF01520; HMM-score: 108.4)and 3 moreSH3 (CL0010) SH3_5; Bacterial SH3 domain (PF08460; HMM-score: 34.8)Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 30.1)SH3 (CL0010) SH3_3; Bacterial SH3 domain (PF08239; HMM-score: 19.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0006
- Cytoplasmic Membrane Score: 0.0005
- Cell wall & surface Score: 0.0002
- Extracellular Score: 0.9987
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009029
- TAT(Tat/SPI): 0.000337
- LIPO(Sec/SPII): 0.000871
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MLITKNQAEKWFDNSLGKQFNPDLFYGFQCYDYANMFFMIATGERLQGLYAYNIPFDNKARIEKYGQIIKNYDSFLPQKLDVVVFPSKYGGGAGHVEIIESANLNTFTSFGQNWNGKGWTNGVAQPGWGPETVTRHVHYYDDPMYFIRLNFPDKVSVGDKAKSIIKQATAKKQAVIKPKKIMLVAGHGYNDPGAVGNGTNERDFIRKYITPNIAKYLRHAGHEVALYGGSSQSQDMYQDTAYGVNVGNNKDYGLYWVKSQGYDIVLEIHLDAAGENASGGHVIISSQFNADTIDKSIQDVIKNNLGQIRGVTPRNDLLNVNVSAEININYRLSELGFITNKKDMDWIKKNYDLYSKLIAGAIHGKPIGGLVAGNVKTSAKNQKNPPVPAGYTLDKNNVPYKKEAGNYTVANVKGNNVRDGYSTNSRITGVLPNNATIKYDGAYCINGYRWITYISNSGQRRYIATGEVDEAGNRISSFGKFSSV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000870 > JSNZ_000871 > JSNZ_000872 > JSNZ_000873 > JSNZ_000874
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)