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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001784
  • pan locus tag?: SAUPAN004512000
  • symbol: JSNZ_001784
  • pan gene symbol?: —
  • synonym:
  • product: DUF4909 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001784
  • symbol: JSNZ_001784
  • product: DUF4909 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1836747..1837202
  • length: 456
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAAATATGTTTAATGCTATATCTACTGATTTTTTTAAGTAGTTGTGGCACAAATAAT
    AAAATAGTAGACCAACGATTTGAAATACAACAACATAATGAAACAATAGGTAGTATTTAC
    TTTTCAGCAGACTATGCACATATAAGAGGTATAGAAAAAGGCACTGCAAAATATTTCGTA
    GACAAAGTAGGCAGCAAACGTTACTTATTTATTGAATATATTCCGGATAATGTATTGAAT
    TGCAAGCCGGACTTTTGGAAAACGTTAAAATATAAAAAGGATAAGATAACATATTATGTA
    TATCTCATTGAAAATTTAGATGATGAAGTATTCCATTTAAGTGCATTACAAGACATGAAT
    CGTATACCAATTGACATTGCAGATGATGTGGCAACAATGGGTAAATCACCACATCAAAAT
    GACAGAATGACACTAAAATTAAATAAAAATAACTGA
    60
    120
    180
    240
    300
    360
    420
    456

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001784
  • symbol: JSNZ_001784
  • description: DUF4909 domain-containing protein
  • length: 151
  • theoretical pI: 8.04575
  • theoretical MW: 17700.3
  • GRAVY: -0.344371

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF4909; Domain of unknown function (DUF4909) (PF16253; HMM-score: 295.8)
    and 1 more
    DUF6567; Family of unknown function (DUF6567) (PF20205; HMM-score: 12.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0296
    • Cytoplasmic Membrane Score: 0.0813
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.8889
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 15 aa
    • SP(Sec/SPI): 0.000751
    • TAT(Tat/SPI): 0.000161
    • LIPO(Sec/SPII): 0.996955
    • Cleavage Site: CS pos: 15-16. LSS-CG. Pr: 0.9982
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKICLMLYLLIFLSSCGTNNKIVDQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFVDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKITYYVYLIENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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