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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1738 [new locus tag: SAUSA300_RS09505 ]
  • pan locus tag?: SAUPAN004512000
  • symbol: SAUSA300_1738
  • pan gene symbol?: —
  • synonym:
  • product: putative lipoprotein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1738 [new locus tag: SAUSA300_RS09505 ]
  • symbol: SAUSA300_1738
  • product: putative lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 1922217..1922672
  • length: 456
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAAATATGTTTAATGCTATATCTACTGATTTTTTTAAGTAGTTGTAGCACAAATAAT
    AAAATAGTAGGCCAACGATTTGAAATACAACAACATAATGAAACAATAGGTAGTATTTAC
    TTTTCAGCAGACTATGCACATATAAGAGGTATAGAAAAAGGCACTGCAAAATATTTCATA
    GACAAAGTAGGCAGCAAACGTTACTTATTTATTGAATATATTCCGGATAATGTATTGAAT
    TGCAAGCCGGACTTTTGGAAAACGTTAAAATATAAAAAGGACAAGGTAACATATTATGTA
    TATCTCATTGAAAATTTAGATGATGAAGTATTCCATTTAAGTGCATTACAAGACATGAAC
    CGTATACCAATTGACATTGCAGATGATGTGGCAACAATGGGTAAATCACCACATCAAAAT
    GACAGAATGACACTAAAATTAAATAAAAATAACTGA
    60
    120
    180
    240
    300
    360
    420
    456


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1738 [new locus tag: SAUSA300_RS09505 ]
  • symbol: SAUSA300_1738
  • description: putative lipoprotein
  • length: 151
  • theoretical pI: 8.42696
  • theoretical MW: 17672.3
  • GRAVY: -0.32649

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV1798
  • PFAM:
    no clan defined DUF4909; Domain of unknown function (DUF4909) (PF16253; HMM-score: 298.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0205
    • Cytoplasmic Membrane Score: 0.0588
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.9203
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.5
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 15 aa
    • SP(Sec/SPI): 0.00099
    • TAT(Tat/SPI): 0.000148
    • LIPO(Sec/SPII): 0.997394
    • Cleavage Site: CS pos: 15-16. LSS-CS. Pr: 0.9985
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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