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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS09505 [old locus tag: SAUSA300_1738 ]
- pan locus tag?: SAUPAN004512000
- symbol: SAUSA300_RS09505
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS09505 [old locus tag: SAUSA300_1738 ]
- symbol: SAUSA300_RS09505
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1922217..1922672
- length: 456
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1922217..1922672) NCBI
- BioCyc: SAUSA300_RS09505 BioCyc
- MicrobesOnline: see SAUSA300_1738
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421ATGAAAATATGTTTAATGCTATATCTACTGATTTTTTTAAGTAGTTGTAGCACAAATAAT
AAAATAGTAGGCCAACGATTTGAAATACAACAACATAATGAAACAATAGGTAGTATTTAC
TTTTCAGCAGACTATGCACATATAAGAGGTATAGAAAAAGGCACTGCAAAATATTTCATA
GACAAAGTAGGCAGCAAACGTTACTTATTTATTGAATATATTCCGGATAATGTATTGAAT
TGCAAGCCGGACTTTTGGAAAACGTTAAAATATAAAAAGGACAAGGTAACATATTATGTA
TATCTCATTGAAAATTTAGATGATGAAGTATTCCATTTAAGTGCATTACAAGACATGAAC
CGTATACCAATTGACATTGCAGATGATGTGGCAACAATGGGTAAATCACCACATCAAAAT
GACAGAATGACACTAAAATTAAATAAAAATAACTGA60
120
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456
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS09505 [old locus tag: SAUSA300_1738 ]
- symbol: SAUSA300_RS09505
- description: hypothetical protein
- length: 151
- theoretical pI: 8.42696
- theoretical MW: 17672.3
- GRAVY: -0.32649
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_1738
- PFAM: no clan defined DUF4909; Domain of unknown function (DUF4909) (PF16253; HMM-score: 298.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 15 aa
- SP(Sec/SPI): 0.00099
- TAT(Tat/SPI): 0.000148
- LIPO(Sec/SPII): 0.997394
- Cleavage Site: CS pos: 15-16. LSS-CS. Pr: 0.9985
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: see SAUSA300_1738
- RefSeq: WP_011443643 NCBI
- UniProt: see SAUSA300_1738
⊟Protein sequence[edit | edit source]
- MKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN
⊟Experimental data[edit | edit source]
- experimentally validated: data available for COL
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.