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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001800
  • pan locus tag?: SAUPAN004629000
  • symbol: JSNZ_001800
  • pan gene symbol?: —
  • synonym:
  • product: NTPase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001800
  • symbol: JSNZ_001800
  • product: NTPase
  • replicon: chromosome
  • strand: -
  • coordinates: 1846506..1848332
  • length: 1827
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGGAAAAATTAAATGAAGCAATTAAAAACTATATAGATAGTGATGAATTGTTCGCCCTT
    TTTATAGATGGACAATGGGGAGTAGGGAAAACTTATTATATTAAAAATAAAATATTAAAG
    GAATTTGATGATAAAATAGAAATTAGGTATATAAGTTTATATGGCCTGCAAAACTTATAT
    GAAATTAAGAGTATAATCATAAGTAAATTGATAAATACATCTACTAAAAATCTTAGGAAA
    GTCCTAAAAAGCATGAAAAATTTCCAAGTAGTACCTTATTTAAATATGAATAACTTTTCT
    GATAACATATTACGTTATATTGATGATAATTCATTAAAAAAGATAAAAAATTCCCTGATG
    AAAAATAATAAAAGTGCGTTGCTAATAATCGATGATGTTGAAAGAATGAGTGACAAAGTA
    AGTTTTGAAGAATTTTTGGGATTTATTAGAAATGATTTAATTGATTATTTAGACTGTAAA
    GTGCTATTTATAGGAAATTTAGATGAGCTAAATAAAAAAGCGGATTTTCATAAGAATAGT
    GAGAAAATAATTTCTAGAATATTAAAATTTCCTAACAATAGAGAAGTAGCAATGGATATA
    GTAAATAGTAATTTACCTGAGTTATTTGTAAAGAACATCTCTAGTAAAGAGCTATTTAAT
    GGTTTTTTTGATATAAGTGATGAAAAAAAAGAAATTATTTTCGAAAAATCTAAACAAAAT
    AATTTAAATTATAAATATTACCATTTGAATATGAGAACTTTGAATTTAGTAGTTTCAAAC
    TTCAAGTTAATTATTAATAAAATGCAAGATGAGATTAAATATAAATCAAAAGATTTTAAA
    ATCACCTTGTACATTTCATTATTCATTTCATTATTTATTCTGTATAATGAATTTCGAAGC
    GGAAATTTAAATGAATCTGAAATTAAGGATCTTCAATTTACATATAATGATTTTAACAAT
    TTAAATACGAAAACATCTATTGCTTTGTTTAAATACTTATACAAAAATAATGAACTAGCA
    AATTATGTCTTTTTTGATATAGAGCTAAAGAACTTATTATTATATGGTATTTTTGATGAA
    TCAATTTTTTTGAAAAATATAACGAATAACTTCAAAGAAGAAGATGCTAAAGCTGATTTA
    TTAAATGTATTAAAAGAATTCTTTAAATTAAGTGAAATTGAACTACTTGAAAAAGAAATT
    CAAGCTATAGAAATAATAAAAGATAAAAATAATGAAAATTTTAATTATAAAGTAAAAGCT
    TATTTATCTTTATTAAATTTAAAAGGAAAAAACTTATATTTAATAGATGACATTAAAATT
    AGCGAATTAGAAGATGAATTAGTGGATAATTACGATTTGCATCAGAATAATTTAATAGTT
    GGAGATACGATAAATAGACTAGATTTAGTTAGTTTTTCAAACGAGCAACTATATGAAGAA
    ATCAAAAGTTTAAAAGACCGTTTAATAAATAAAAGAACAACTTTAATGACTTCTATATAT
    AACCAATACTTAGAAACTATTTTAAATGGTGATTTTACAAATAGAACTAAATTAAAAGAA
    GCGTATATTGGAACGAAAGATATAGATACTATAGAAATAATCTATAATAATTTAAACAAA
    GTATCAAATGAGCTTAAAAGTAGTAATGAGAAAATTATTAATTTAAGTGCATTCATTAAA
    GATAATCATTGTAATTATAATGATAATATTCAATTAGAATATATTATAGGTGAGATGAAA
    AAATTAAAAGATGGTACTAAAGATAGAGTTACACAAATGTGTTTTAGCTTGTTGATCGAT
    ACACTGAAAGATATAATAGATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1827

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001800
  • symbol: JSNZ_001800
  • description: NTPase
  • length: 608
  • theoretical pI: 5.33232
  • theoretical MW: 71697.9
  • GRAVY: -0.359046

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) Bac_DnaA; Bacterial DnaA ATPAse domain (PF00308; HMM-score: 22.2)
    and 5 more
    AAA_22; AAA domain (PF13401; HMM-score: 16.9)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 15.6)
    no clan defined DUF5798; Family of unknown function (DUF5798) (PF19111; HMM-score: 13.3)
    P-loop_NTPase (CL0023) NACHT; NACHT domain (PF05729; HMM-score: 11.7)
    KAP_NTPase; KAP family P-loop domain (PF07693; HMM-score: 10.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.1667
    • Cytoplasmic Membrane Score: 0.1511
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.6818
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003349
    • TAT(Tat/SPI): 0.000116
    • LIPO(Sec/SPII): 0.000585
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEKLNEAIKNYIDSDELFALFIDGQWGVGKTYYIKNKILKEFDDKIEIRYISLYGLQNLYEIKSIIISKLINTSTKNLRKVLKSMKNFQVVPYLNMNNFSDNILRYIDDNSLKKIKNSLMKNNKSALLIIDDVERMSDKVSFEEFLGFIRNDLIDYLDCKVLFIGNLDELNKKADFHKNSEKIISRILKFPNNREVAMDIVNSNLPELFVKNISSKELFNGFFDISDEKKEIIFEKSKQNNLNYKYYHLNMRTLNLVVSNFKLIINKMQDEIKYKSKDFKITLYISLFISLFILYNEFRSGNLNESEIKDLQFTYNDFNNLNTKTSIALFKYLYKNNELANYVFFDIELKNLLLYGIFDESIFLKNITNNFKEEDAKADLLNVLKEFFKLSEIELLEKEIQAIEIIKDKNNENFNYKVKAYLSLLNLKGKNLYLIDDIKISELEDELVDNYDLHQNNLIVGDTINRLDLVSFSNEQLYEEIKSLKDRLINKRTTLMTSIYNQYLETILNGDFTNRTKLKEAYIGTKDIDTIEIIYNNLNKVSNELKSSNEKIINLSAFIKDNHCNYNDNIQLEYIIGEMKKLKDGTKDRVTQMCFSLLIDTLKDIIDE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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