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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001801
- pan locus tag?: SAUPAN004631000
- symbol: JSNZ_001801
- pan gene symbol?: hsdS
- synonym:
- product: restriction endonuclease subunit S
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001801
- symbol: JSNZ_001801
- product: restriction endonuclease subunit S
- replicon: chromosome
- strand: -
- coordinates: 1848369..1849604
- length: 1236
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1201ATGAGTAATACACAAAAGAAAAATGTGCCAGAGTTGAGATTCCCAGGGTTTGAAGGCGAA
TGGGAAGAAAAGAAGTTAGGGGAAGTAGCAACTTTTGCCAAAGGTAAATTAGGCGCTAAG
AAAGATGTGAGTCAAAATGGTGTGCCAGTAATATTGTATGGAGAATTATATACAAAGTAT
GGTGCTATTGTTAGCAAGATTTTTAGTAAAACAGATATTCCTGAAAACAAATTAAAAATG
GCTAAAAAAAATGACGTTCTTATTCCATCATCTGGGGAAACAGCAATTGATATAGCAACT
GCATCGTGCATTTATTTAAATAAAGGTGTTGCAGTTGGTGGAGACATTAATATTTTAACA
CCTCAAAAGCAAGACGGTAGGTTTATTTCATTGTCAATTAATGGAATAAATAAAAATGAA
TTATCTAAATATGCACAAGGGAAGACAGTAGTTCATTTATATAATAATGATATTAAAAAT
TTGAAAATAGCATTTCCAAGCGAATTTGAAGAACAAGTAAGAATAGGTAATTTCTTCAGC
AAACTCGACCGGCAAATTGAATTAGAAGAACAAAAACTTGAATTGCTTCAACAACAGAAA
AAAGGCTATATGCAGAAAATTTTCTCACAGGAATTACGATTCAAAGATGAGAATGGTAAT
GATTATCCAAAGTGGGAAGAGAAGAAAATAGAAGATATAGCAAGCCAAGTATATGGAGGT
GGAACACCAAATACAAAAATCAAAGAATTTTGGAATGGTGATATTCCATGGATTCAAAGC
TCTGACGTAAAAGTAAATGATTTGATTCTACAACAATGTAATAAATTTATTTCCAAGAAT
TCAATTGAGCTTTCTTCTGCAAAACTTATTCCTGCCAATTCAATTGCAATAGTTACAAGA
GTCGGGGTTGGAAAACTGTGTTTGGTAGAATTTGATTATGCTACAAGTCAAGATTTTTTA
TCATTAAGTAGTCTTAAATATGACAAATTATACTCATTATATTCATTGCTATACACAATG
AAAAAAATTAGCGCTAATCTACAAGGAACCTCAATTAAAGGTATAACAAAAAAAGAGTTG
TTAGATAGTATAATAAAGATACCCCATAATCTAGAAGAACAGCAAAAAATAGGTGATCTA
TTTTATAAAATTGATAAATATATCAGTTTTAATAAATGTAAAATTGAGATACTTAAAAGT
CTCAAACAAGGATTACTTAAAAAAATGTTTATATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001801
- symbol: JSNZ_001801
- description: restriction endonuclease subunit S
- length: 411
- theoretical pI: 9.61828
- theoretical MW: 46506.5
- GRAVY: -0.375182
⊟Function[edit | edit source]
- reaction: EC 3.1.21.-? ExPASy
- TIGRFAM:
- TheSEED:
- PFAM: TRD (CL0477) Methylase_S; Type I restriction modification DNA specificity domain (PF01420; HMM-score: 135.1)and 1 moreDUF6943; Family of unknown function (DUF6943) (PF22105; HMM-score: 6.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7573
- Cytoplasmic Membrane Score: 0.0142
- Cell wall & surface Score: 0.0064
- Extracellular Score: 0.2221
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.011617
- TAT(Tat/SPI): 0.001643
- LIPO(Sec/SPII): 0.00126
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MSNTQKKNVPELRFPGFEGEWEEKKLGEVATFAKGKLGAKKDVSQNGVPVILYGELYTKYGAIVSKIFSKTDIPENKLKMAKKNDVLIPSSGETAIDIATASCIYLNKGVAVGGDINILTPQKQDGRFISLSINGINKNELSKYAQGKTVVHLYNNDIKNLKIAFPSEFEEQVRIGNFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENGNDYPKWEEKKIEDIASQVYGGGTPNTKIKEFWNGDIPWIQSSDVKVNDLILQQCNKFISKNSIELSSAKLIPANSIAIVTRVGVGKLCLVEFDYATSQDFLSLSSLKYDKLYSLYSLLYTMKKISANLQGTSIKGITKKELLDSIIKIPHNLEEQQKIGDLFYKIDKYISFNKCKIEILKSLKQGLLKKMFI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_001800 < JSNZ_001801 < JSNZ_001802
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)