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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002158
  • pan locus tag?: SAUPAN005584000
  • symbol: JSNZ_002158
  • pan gene symbol?: —
  • synonym:
  • product: alpha/beta hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002158
  • symbol: JSNZ_002158
  • product: alpha/beta hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2176310..2177179
  • length: 870
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    GTGAAGAAAATTTTTGTAATTAGTACGACATTGTTAGCGGTCGCTATTATTATAGGCACT
    ATTATTACGGTTGTGTTTAGTCAACGACAGGCACAAACATTTAAAATACAACAACAGCAA
    TTTGTTAAAAAGCCAATTCCGACATTGTTTTTACATGGATTTGGTGGTAGTGCCAACTCT
    GAAAAATTTATGGTGAAACAAGCAGAAAAAAGAGGGGTAACTAAAGATATCATCACTGCT
    TACGTTTCAAAGGATGGTGCAGTGACATTTAAAGGGAAACTAAGAAAAGATGCAGTGAAT
    CCTATTGTGAAAATTGAACTTGAAAATAACAGACAAGGCTATTTGGATAAGAATGCTGCG
    TGGTTTAAAAATGTACTGACTAAGTTACAATCTGAATACAATTTCGATAAATTCAACTTT
    GTCGGTCACTCAATGGGGAACTTAACATTTGCACAATATATGATGACATATGGTAACGAA
    AAGTCACTGCCACAGTTAAACAAACAAGTGAATATTGCAGGGACATTTAATGGTGTTTTA
    AATATGAATGAAGATGTCAATGAAATTACAGTTGATAAAGATGGTAAACCAAGTCGAATG
    AATCAACCTTATCAGCAATTACGCGTGCTAAAAGATATTTATAAAGGTAAAGGTATCGAA
    GTGCTAAATATTTATGGAGATTTGAAAGATGGTACACATTCAGACGGCAGAGTGTCTAAT
    AGTTCTTCGAAATCATTAAAATATTTACTGGGAAATAGTCCGAAAAGTTATCGAGAATCT
    AAATATGAAGGTGAGCCTGCACAACATAGTCAGCTTCATGAGAATGAAAATGTTGCTAAT
    GAGTTAATCGACTTCTTATGGAAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    870

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002158
  • symbol: JSNZ_002158
  • description: alpha/beta hydrolase
  • length: 289
  • theoretical pI: 10.1106
  • theoretical MW: 32687.2
  • GRAVY: -0.483391

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    AB_hydrolase (CL0028) DUF915; Alpha/beta hydrolase of unknown function (DUF915) (PF06028; HMM-score: 343.8)
    and 4 more
    Palm_thioest; Palmitoyl protein thioesterase (PF02089; HMM-score: 22.6)
    Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 21)
    DUF676; Putative serine esterase (DUF676) (PF05057; HMM-score: 17)
    Lysozyme (CL0037) T6SS_Tse3_cat; T6SS, Peptidoglycan muramidase Tse3, catalytic domain (PF22115; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0008
    • Cytoplasmic Membrane Score: 0.8396
    • Cell wall & surface Score: 0.0026
    • Extracellular Score: 0.157
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 31 aa
    • SP(Sec/SPI): 0.696127
    • TAT(Tat/SPI): 0.00203
    • LIPO(Sec/SPII): 0.018319
    • Cleavage Site: CS pos: 31-32. RQA-QT. Pr: 0.4068
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKIFVISTTLLAVAIIIGTIITVVFSQRQAQTFKIQQQQFVKKPIPTLFLHGFGGSANSEKFMVKQAEKRGVTKDIITAYVSKDGAVTFKGKLRKDAVNPIVKIELENNRQGYLDKNAAWFKNVLTKLQSEYNFDKFNFVGHSMGNLTFAQYMMTYGNEKSLPQLNKQVNIAGTFNGVLNMNEDVNEITVDKDGKPSRMNQPYQQLRVLKDIYKGKGIEVLNIYGDLKDGTHSDGRVSNSSSKSLKYLLGNSPKSYRESKYEGEPAQHSQLHENENVANELIDFLWKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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