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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002495
  • pan locus tag?: SAUPAN006162000
  • symbol: JSNZ_002495
  • pan gene symbol?: mhqD
  • synonym:
  • product: alpha/beta hydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002495
  • symbol: JSNZ_002495
  • product: alpha/beta hydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2503914..2504507
  • length: 594
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAACATATTTTTAGAGAAGGACAAAATGGTGCGCCAACACTAATATTATTGCATGGT
    ACAGGTGGTGATGAGTTCGATTTATTACCGTTAGGCGAAGCATTGAATGAAAATTATCAC
    TTGTTAAGTATTAGAGGACAAGTTTCAGAAAATGGGATGAACCGTTATTTCAAACGTCTT
    GGTGAAGGTGTTTATGATGAAGAAGATTTGGCATTTCGTGGACAAGAATTGTTAACGTTC
    ATTAAAGAAGCTGCTGAACGTTATGAATTTGATATTGAAAAGGCTGTGCTTGTTGGATTT
    TCAAATGGATCAAATATAGCGATTAACTTAATGTTGCGTTCAGAAGCACCATTTAAAAAA
    GCATTGTTATATGCACCGTTATACCCAGTTGAAGTAACGTCAACAAAGAATTTATCAGAT
    GTCAGTGTGTTGCTTTCTATGGGGAAACATGATCCAATTGTGCCATTAGCTGCAAGTGAA
    CAAGTCATTAACTTGTTTAAGACACGTGGGGCACAAGTCGAAGAAGTTTGGGTGAATGGT
    CATGAAATTACAGAAACTGGATTAACGGCTGGTCAACAAATACTTGGGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    594

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002495
  • symbol: JSNZ_002495
  • description: alpha/beta hydrolase
  • length: 197
  • theoretical pI: 4.80854
  • theoretical MW: 21804.7
  • GRAVY: -0.149239

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (TIGR03695; EC 4.2.99.20; HMM-score: 22.1)
    pyrimidine utilization protein D (TIGR03611; HMM-score: 18.6)
    and 1 more
    Metabolism Energy metabolism Photosynthesis putative magnesium chelatase accessory protein (TIGR03056; HMM-score: 13.7)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    AB_hydrolase (CL0028) Abhydrolase_2; Phospholipase/Carboxylesterase (PF02230; HMM-score: 41.5)
    and 11 more
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 27.6)
    BD-FAE; BD-FAE (PF20434; HMM-score: 24.7)
    Peptidase_S9; Prolyl oligopeptidase family (PF00326; HMM-score: 23.9)
    DLH; Dienelactone hydrolase family (PF01738; HMM-score: 22.9)
    Abhydrolase_3; alpha/beta hydrolase fold (PF07859; HMM-score: 20.9)
    Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 18.5)
    Abhydrolase_6; Alpha/beta hydrolase family (PF12697; HMM-score: 18.5)
    DUF915; Alpha/beta hydrolase of unknown function (DUF915) (PF06028; HMM-score: 17)
    Esterase; Putative esterase (PF00756; HMM-score: 16.9)
    FSH1; Serine hydrolase (FSH1) (PF03959; HMM-score: 14.1)
    DUF676; Putative serine esterase (DUF676) (PF05057; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9966
    • Cytoplasmic Membrane Score: 0.001
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.0017
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006126
    • TAT(Tat/SPI): 0.000377
    • LIPO(Sec/SPII): 0.001706
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKHIFREGQNGAPTLILLHGTGGDEFDLLPLGEALNENYHLLSIRGQVSENGMNRYFKRLGEGVYDEEDLAFRGQELLTFIKEAAERYEFDIEKAVLVGFSNGSNIAINLMLRSEAPFKKALLYAPLYPVEVTSTKNLSDVSVLLSMGKHDPIVPLAASEQVINLFKTRGAQVEEVWVNGHEITETGLTAGQQILGK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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