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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002563
- pan locus tag?: SAUPAN006261000
- symbol: JSNZ_002563
- pan gene symbol?: —
- synonym:
- product: nucleoside recognition domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002563
- symbol: JSNZ_002563
- product: nucleoside recognition domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 2570648..2571988
- length: 1341
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGTTAGAAGTGAAATATGATATGAGAACGGGGCATTATACGCCCATACCTAATGAACCT
CATTATTTGGTTATTAGTCATGCGGATAAACTTACCGCAACAGAAAAAGCGAAATTAAGA
TTATTAATCATAAAACAGAAATTAGATATTTCATTGGCAGAAAGTGTAGTTTCTTCGCCT
ATAGCGAGCGAACATGTGATAGAACAATTGACACTATTTCAACATGAGCGACGACATTTA
AGACCTAAAATAAGTGCGACATTTTTAGCCTGGTTGTTGATATTTTTAATGTTTGCATTG
CCAATCGGTATCGCTTATCAATTTTCAGATTGGTTTCAAAATCAGTATGTATCAGCATGG
ATAGAATATTTAACTCAAACAACATTGCTCAATCACGATATATTACAACATATATTATTT
GGTGATTATGGTGTGCTATCACTTGGAACATATTCGCTCGTATGGGCATTGCCGGTCGTA
ATATTGATTAGTTTATCAACTGCTATAATTGATCAAACAGGACTTAAATCATGGATGATA
TGGGCAATTGAACCTTCAATGTTACGGATAGGATTACAAGGTAATGATATCGTGCCACTA
TTAGAAGGATTTGGATGTAATGCAGCAGCTATTTCACAAGCAGCACACCAATGCCATACC
TGCACGAAGACACAGTGTATGAGTTTAATAAGCTTTGGTAGTTCTTGTAGTTATCAAATA
GGTGCGACATTATCTATTTTTAGTGTAGCTGGAAAGTCATGGCTATTTATGCCGTACTTA
ATATTAGTACTTTTAGGTGGCATCTTACATAATAGGATATGGTTGAAAAAGAATGATCAA
CAACTTAGCGTTCCGCTACCTTATGATAGGCAATTACATATGCCAAATATACGTCAAATG
TTGCTACAAATGTGGCAAAATATACAAATGTTTATCGTTCAAGCGCTACCTATTTTTATC
ACAATCTGTCTTATTGTTAGTATTTTATCACTAACGCCAATTTTGAATGTTTTATCACAA
ATATTTACACCTATATTATCGTTATTAGGCATCTCGTCAGAATTGTCACCAGGGATTTTA
TTTTCAATGATTCGAAAAGACGGCATGCTCTTGTTTAATTTGCATCAGGGCGCCTTATTA
CAAGGAATGACAGCAACACAGTTACTACTACTTGTGTTTTTTAGTTCAACTTTTACAGCG
TGCTCGGTCACAATGACGATGCTTTTGAAACATTTAGGTGGTCAGTCAGCACTAAAATTA
ATTGGAAAGCAAATGGTGACATCATTGTCTTTAGTTATTGGTGTAGGCATCATTGTTAAA
ATAGTAATGCTGATTATTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002563
- symbol: JSNZ_002563
- description: nucleoside recognition domain-containing protein
- length: 446
- theoretical pI: 8.6455
- theoretical MW: 49848.2
- GRAVY: 0.623991
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds ferrous iron transport protein B (TIGR00437; HMM-score: 82.3)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: no clan defined Gate; Nucleoside recognition (PF07670; HMM-score: 64.8)and 2 morePhage_holin_3_7; Putative 3TM holin, Phage_holin_3 (PF05449; HMM-score: 16.4)FeoB_C; Ferrous iron transport protein B C terminus (PF07664; HMM-score: 14.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 8
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9997
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002065
- TAT(Tat/SPI): 0.000176
- LIPO(Sec/SPII): 0.000591
- predicted transmembrane helices (TMHMM): 8
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_002563 < JSNZ_002564
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p) - ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
Curr Res Microb Sci: 2025, 9;100489
[PubMed:41146725] [WorldCat.org] [DOI] (I e)