From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002690
  • pan locus tag?: SAUPAN006466000
  • symbol: vraE
  • pan gene symbol?: vraE
  • synonym:
  • product: peptide resistance ABC transporter permease subunit VraE

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002690
  • symbol: vraE
  • product: peptide resistance ABC transporter permease subunit VraE
  • replicon: chromosome
  • strand: +
  • coordinates: 2708173..2710053
  • length: 1881
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGACATTTAACCATATCGTTTTCAAAAACTTACGACAAAACTTAAAACATTATGCAATG
    TATTTATTTTCATTATTTTTTAGCATCGTCTTATATTTCAGTTTTACAACCTTACAGTTT
    ACTAAAGGTGTAAATAATGACGACTCGATGGCCATCATTAAGAAAGGTGCTTTAGTCGGA
    TCAATATTTTTATTTATCATTATTGTCATCTTTTTAATGTATGCCAATCATTTATTCGTA
    AAACGCCGTACACGTGAATTTGCGCTATTTCAGTTGATTGGTTTAACACGACAAAACATT
    TTGAAAATGTTAGCACTTGAACAAATGATTGTATTTTTAATCACAGGTGTTGTCGGTGTA
    TTATGTGGCATTGCAGGTGCACAATTATTGCTTTCCATTGTATCTAAATTGATGTCGTTA
    TCGATTAACTTATCGATACATTTCGAACCTATGGCCCTTGTTTTAACTATTTTAATGCTA
    ATTATTGCGTATATACTGATTTTATTTCAAAGTGCTTTATTTCTAAAAAGACGCAGTATC
    TTATCAATGATGAAAGACTCAATTAAAACTGATGTTACAACTGCGAAAGTTACAGTTATA
    GAAGTCATTTCAGGCGTATTAGGTATTGCTATGATTGCACTAGGCTATTATATGGCGACA
    GAAATGTTTGGTACGTTCAAAGCACTAACTATGGCTATGACATCACCGTTTATCATTTTA
    TTTTTAACGGTTGTAGGCGCCTATTTATTCTTCAGAAGTTCCGTGTCACTGATTTTTAAA
    ACTTTGAAAAAATCTAAAAATGGACGCGTATCTATTACAGATGTTGTATTTACATCGTCT
    ATTATGTACCGAATGAAGAAAAATGCCATGTCTTTAACTATCATTGCAATTATTTCTGCA
    GTTACAGTAACTGTATTGTGTTTCGCGGCATTATCTAAATCAAATACAGATCAAACCCTT
    ACATCTATGGCACCAAATGAATTTAACGTGGTCGCTACTCAAGATGCTAAACAATTTGAA
    ACTAAACTAAGCCAACAACAAATTACATTTTCTAAAAATGCTTACGAAACTATTACTGTA
    GATAATGTTAAAGATCAGGTTATTACTTTGGAAAATGGTAGTGATTCAGGTCGCACGAAT
    TCTATTTTAAGTGCAAATAACAAGTTAACAGGCAACAATGCCATCATTACAAATACAAAA
    TCGCTGCCTAACATTATTAATATCCATTTAAACAAAGATTTAGTAGTAAAAGGTACTAAG
    AATGAAACTTTCCGTGTTACACAAGAAGACAAAGGTAAGGTTTATCCTTTAAATCTAAGC
    TTCAACTCACCTGTCATCGAAGTAAGTCCTGAAAAGTATCAGCAGTTGAAAACACAAAAT
    AACGTTCATACTTTTTATGGATATGATATTAAACAAACATCACAAAAGGAAAAAGCTCAA
    GCAATTGCAAAACAGTTTGGAGACAAAGTCATCACTTATGATGAAATGAAAAAAGAGGTC
    GATGCTACTAACGGTATTCTAATATTTGTTACATCATTTTTAGGATTAGCATTTTTAGTA
    GCAGCTGGATGTATTATTTATATTAAACAAATGGATGAAACTGAGGATGAACTAAGTAAC
    TTCAGAATATTAAAACGCATAGGCTTTACGCATACAGATATGCTTAAGGGATTATTATTA
    AAAATTACTTTCAACTTCGGTTTACCATTATTGATTGCTATATTACATGCAGTATTCGCC
    GCAATAGCATTTATGAAATTGATGGGTAATATTTCCTTCATGCCGGTTATTGTAGTAATT
    GTTGTATACACCCTCATTTACATTACTTTTGCTTTAATTGCTTTTGTACATTCAAACAAA
    TTGTTTAAGAAAACCATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1881

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002690
  • symbol: VraE
  • description: peptide resistance ABC transporter permease subunit VraE
  • length: 626
  • theoretical pI: 10.2122
  • theoretical MW: 70088.9
  • GRAVY: 0.511661

⊟Function[edit | edit source]

  • TIGRFAM:
    acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 19.3)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease C-terminal (PF02687; HMM-score: 60.9)
    and 2 more
    Lysozyme (CL0037) T6SS_VgrG3-like_C; Type VI secretion system spike protein VgrG3-like, C-terminal (PF21277; HMM-score: 17.3)
    no clan defined V-ATPase_su_f; V-type proton ATPase subunit f-like (PF23489; HMM-score: 14.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9995
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0005
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009921
    • TAT(Tat/SPI): 0.000156
    • LIPO(Sec/SPII): 0.006009
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTFNHIVFKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILKMLALEQMIVFLITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTILMLIIAYILILFQSALFLKRRSILSMMKDSIKTDVTTAKVTVIEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNEFNVVATQDAKQFETKLSQQQITFSKNAYETITVDNVKDQVITLENGSDSGRTNSILSANNKLTGNNAIITNTKSLPNIINIHLNKDLVVKGTKNETFRVTQEDKGKVYPLNLSFNSPVIEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKEKAQAIAKQFGDKVITYDEMKKEVDATNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIVVIVVYTLIYITFALIAFVHSNKLFKKTI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=JSNZ_002690&oldid=108332"