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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0130 [new locus tag: NWMN_RS00715 ]
  • pan locus tag?: SAUPAN001028000
  • symbol: NWMN_0130
  • pan gene symbol?: brnQ1
  • synonym:
  • product: branched-chain amino acid transport system II carrier protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0130 [new locus tag: NWMN_RS00715 ]
  • symbol: NWMN_0130
  • product: branched-chain amino acid transport system II carrier protein
  • replicon: chromosome
  • strand: -
  • coordinates: 162471..163826
  • length: 1356
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAGAAGAAACTAACATTTAAAGAAAACATGTTTATAGGTTCTATGTTATTTGGTTTA
    TTCTTTGGTGCCGGCAATCTTATCTTCCCAATACACTTGGGTCAAGCTGCTGGTTCTAAC
    GTTTTTATCGCTAACTTAGGATTTTTAATTACAGCAATTGGCTTACCATTTCTAGGTATC
    ATTGCTATTGGCATTTCAAAGACATCTGGTTTATTTGAAATTGCATCGCGTGTTAATAAA
    ACATATGCTTACATTTTCACGATTGCCTTATATCTAGTTATCGGACCATTTTTCGCCTTA
    CCTAGACTGGCAACGACATCATTTGAAATTGCATTTTCGCCATTTTTATCACCAAAGCAA
    ATCACTTTATATTTATTTATTTTTAGCTTCGTCTTCTTTGTGATTGCATGGTTTTTTGCG
    AGAAAGCCATCAAGAATTTTAGAATATATCGGTAAATTTTTAAATCCGGTATTCTTAGTA
    TTATTAGCAATTATTTTATTATTTGCTTTTATCCATCCATTAGGTGGCATATCTGATGCA
    CCTATTAGTAAACAATATCAATCACATGCCTTATTTAACGGCTTTTTAGATGGATACAAT
    ACCTTAGATGCGCTAGCGTCATTGGCATTTGGTATTATCATTGTTGCAACGATTAAAAAG
    TTAGGTATCGAAAATCCAACTGATATCGCTAAAGAAACAATTAAGTCTGGTACTATCAGT
    ATCATTATGATGGGGATCATTTATACCCTACTAGCAATCATGGGTACATTAAGTATTGGT
    CATTTCAAACTTAGTGAAAATGGTGGTATTGCCTTAGCGCAAATTACTCAATACTACTTA
    GGTAACTACGGTATCGTCCTGTTGTCACTTATCGTTATGGTTGCTTGTTTAAAAACAGCC
    ATCGGTTTGATTACGGCATTTTCAGAAACATTCGAACACCTTTTCCCTAAAATGAATTAC
    CTAGCGATTGCAACAGTTGTAAGCTTTATTTCGTTCTTATTCGCGAATGTTGGTTTAACT
    AAGATTATTATGTACTCAGTCCCAGTGTTAATGTTCTTATATCCATTAGCAATTGCCTTG
    ATTGTACTAACATTATTTAGTAGCAAATTCCATCATTCAAAACTTATTTATCAATGTACC
    ATTTTCTTTACAATGATTGCTGCATTAGTAGATGGATTAAAAGCTAGTCCAGAGTTCATT
    TCAAGCACATCATTCTCACAAACTTTGATTAATTTCAGCCAAAAATATTTACCATTATCA
    GACATTGGTATGGGCTGGGTTGTTCTCAGTTTGATTGGTTTCATTATCGGCTTCATTATT
    TATAAAATTAAGCATCGTAAAATTCCACAAGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1356

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0130 [new locus tag: NWMN_RS00715 ]
  • symbol: NWMN_0130
  • description: branched-chain amino acid transport system II carrier protein
  • length: 451
  • theoretical pI: 10.0084
  • theoretical MW: 49700.4
  • GRAVY: 0.958093

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Amino acids, peptides and amines branched-chain amino acid transport system II carrier protein (TIGR00796; HMM-score: 412.2)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    APC (CL0062) Branch_AA_trans; Branched-chain amino acid transport protein (PF05525; HMM-score: 534.2)
    and 1 more
    no clan defined Renin_r; Renin receptor-like protein (PF07850; HMM-score: 10.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.095231
    • TAT(Tat/SPI): 0.002887
    • LIPO(Sec/SPII): 0.046472
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKKLTFKENMFIGSMLFGLFFGAGNLIFPIHLGQAAGSNVFIANLGFLITAIGLPFLGIIAIGISKTSGLFEIASRVNKTYAYIFTIALYLVIGPFFALPRLATTSFEIAFSPFLSPKQITLYLFIFSFVFFVIAWFFARKPSRILEYIGKFLNPVFLVLLAIILLFAFIHPLGGISDAPISKQYQSHALFNGFLDGYNTLDALASLAFGIIIVATIKKLGIENPTDIAKETIKSGTISIIMMGIIYTLLAIMGTLSIGHFKLSENGGIALAQITQYYLGNYGIVLLSLIVMVACLKTAIGLITAFSETFEHLFPKMNYLAIATVVSFISFLFANVGLTKIIMYSVPVLMFLYPLAIALIVLTLFSSKFHHSKLIYQCTIFFTMIAALVDGLKASPEFISSTSFSQTLINFSQKYLPLSDIGMGWVVLSLIGFIIGFIIYKIKHRKIPQA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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