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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0304 [new locus tag: NWMN_RS01730 ]
  • pan locus tag?: SAUPAN000620000
  • symbol: NWMN_0304
  • pan gene symbol?: —
  • synonym:
  • product: phage minor structural protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0304 [new locus tag: NWMN_RS01730 ]
  • symbol: NWMN_0304
  • product: phage minor structural protein
  • replicon: chromosome
  • strand: +
  • coordinates: 351232..353118
  • length: 1887
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGCCAATTTTATTAAAAAGTCTACAGGGTGTAGGGCACGCTATTAATGTTAGTACAAAG
    GTAAGTAAAAAGCTAAATGAAGATAGTTCTTTGGATCTAACTATTATCGAGAACGCGAGT
    ACGTTTGACGCAATAGGTGCTATAACTAAAATGTGGACGATCACTCATGTTGAAGGTGAA
    GATGATTTCAACGAATATGTAATTGTCATACTTGATAAGTCTACTATTGGCGAAAAAATA
    AGGCTTGATATCAAAGCTAGGCAAAAAGAACTTGATGACCTTAACAATTCTAGGATTTAC
    CAAGAGTATAACGAAAGTTTTACAGGCGTTGAGTTCTTCAATACTGTCTTTAAAGGAACG
    GGTTATAAGTATGTATTACATCCAAAAGTAGATGCATCTAAATTCGAGGGATTAGGCAAA
    GGAGATACACGATTAGAAATCTTTAAAAAAGGACTTGAGCGTTATCATCTCGAATATGAA
    TACGATGCAAAGACTAAAACGTTTCATTTGTATGATGAATTATCTAAGTTTGCCAATTAT
    TACATTAAAGCTGGTGTGAATGCTGATAACGTCAAAATACAAGAAGATGCATCTAAATGT
    TATACCTTTATTAAAGGTTATGGTGATTTTGATGGACAACAGACTTTTGCAGAAGCGGGA
    CTACAAATTGAATTCACTCATCCATTAGCACAATTGATAGGTAAAAGAGAAGCGCCACCG
    CTTGTTGATGGACGTATTAAAAAAGAAGATAGTTTAAAAAAAGCAATGGAGTTATTGATA
    AAGAAAAGTGTCACTGCTTCTATTTCCTTAGACTTTGTAGCGTTACGTGAACATTTCCCA
    GAAGCTAACCCTAAAATAGGTGATGTTGTTAGAGTGGTGGATTCTGCCATAGGATATAAC
    GACTTAGTGAGAATAGTCGAAATCACTACACATAGAGATGCGTACAATAATATCACTAAG
    CAAGATGTAGTATTAGGAGACTTTACAAGGCGTAATCGTTATAACAAAGCAGTTCATGAT
    GCTGCAAATTATGTTAAAAGCGTAAAATCTACAAAATCCGACCCATCTAAAGAACTAAAA
    GCATTAAACGCAAAAGTTAACGCAAGTTTATCTATAAATAATGAATTGGTTAAGCAGAAT
    GAAAAAATAAACGCTAAAGTCGATAAGATGAATACTAAAACAGTTACAACTGCTAATGGT
    ACGATCATGTACGACTTTACTAGTCAATCAAGTATAAGAAACATCAAATCAATTGGAACG
    ATTGGCGACTCTGTAGCTAGAGGGTCGCACGCAAAAACTAATTTCACAGAAATGTTAGGC
    AAGAAATTGAAAGCTAAAACGACTAATCTTGCAAGAGGTGGCGCAACAATGGCAACAGTT
    CCAATAGGTAAAGAAGCGGTAGAAAACAGCATTTATAGACAAGCAGAGCAAATAAGAGGA
    GACCTAATCATATTACAAGGCACTGATGATGATTGGTTACACGGTTATTGGGCAGGCGTA
    CCGATAGGCACTGATAAAACGGATACAAAAACGTTTTACGGTGCCTTTTGTTCTGCAATT
    GAAGTTATTAGAAAGAATAATCCAGATTCAAAAATACTAGTGATGACAGCTACAAGACAA
    TGCCCTATGAGTGGTACAACAATACGCCGTAAAGACACGGACAAAAACAAACTAGGGTTA
    ACACTTGAGGACTATGTAAACGCTCAAATATTAGCTTGTAGTGAGTTAGATGTACCAGTG
    TTTGACGCATATCACACAGATTACTTTAAGCCATACAATCCAGCTTTTAGGAAAGCGAGC
    ATGGAGGACGGCTTACACCCTAACGAAAAAGGTCACGAGGTTATTATGTACGAGTTAATC
    AAGGATTATTACAGTTTTTACGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1887

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0304 [new locus tag: NWMN_RS01730 ]
  • symbol: NWMN_0304
  • description: phage minor structural protein
  • length: 628
  • theoretical pI: 7.70694
  • theoretical MW: 70542.5
  • GRAVY: -0.451115

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Phage_barrel (CL0504) Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 91.1)
    and 3 more
    SGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 57.8)
    Lipase_GDSL; GDSL-like Lipase/Acylhydrolase (PF00657; HMM-score: 31)
    no clan defined Ntox50; Bacterial toxin 50 (PF15542; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008748
    • TAT(Tat/SPI): 0.000642
    • LIPO(Sec/SPII): 0.002073
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPILLKSLQGVGHAINVSTKVSKKLNEDSSLDLTIIENASTFDAIGAITKMWTITHVEGEDDFNEYVIVILDKSTIGEKIRLDIKARQKELDDLNNSRIYQEYNESFTGVEFFNTVFKGTGYKYVLHPKVDASKFEGLGKGDTRLEIFKKGLERYHLEYEYDAKTKTFHLYDELSKFANYYIKAGVNADNVKIQEDASKCYTFIKGYGDFDGQQTFAEAGLQIEFTHPLAQLIGKREAPPLVDGRIKKEDSLKKAMELLIKKSVTASISLDFVALREHFPEANPKIGDVVRVVDSAIGYNDLVRIVEITTHRDAYNNITKQDVVLGDFTRRNRYNKAVHDAANYVKSVKSTKSDPSKELKALNAKVNASLSINNELVKQNEKINAKVDKMNTKTVTTANGTIMYDFTSQSSIRNIKSIGTIGDSVARGSHAKTNFTEMLGKKLKAKTTNLARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWAGVPIGTDKTDTKTFYGAFCSAIEVIRKNNPDSKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYVNAQILACSELDVPVFDAYHTDYFKPYNPAFRKASMEDGLHPNEKGHEVIMYELIKDYYSFYD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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