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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0759 [new locus tag: NWMN_RS04295 ]
  • pan locus tag?: SAUPAN002797000
  • symbol: NWMN_0759
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0759 [new locus tag: NWMN_RS04295 ]
  • symbol: NWMN_0759
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 856013..856483
  • length: 471
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAAAGGAAAGTATTAGTACTAACAATGGGTGTAATTTGTGCAACTCAATTATGGCAT
    TCTAATCACGCAAACGCATTAGTAACAGAGAGTGGCGCAAATGATACTAAGCAATTTACT
    GAAATTGTATCGGAAGAGAAAGTTATAACAGTTGAACATGCTCAAATTAATATTTTTCAA
    TCTAATAGCAATTCAAACTTGATGGAGTTCAACATATTAACAATGGGCGGTAAATCAGGA
    GCTATGGTTGGTTATAGTGAAATTGACTCATCACATTTCACAGACCGTGACAAACGCGTT
    ATTAGACGTGATCATGTTAAAGAAGCACAAAGCTTAGTAGAGAACTATAAAGATACACAA
    AGTGCTGATGCTAGGATGAAAGCCAAACAAAAAGTTAACACATTAAGCAAACCGCATCAA
    AACTATTTCAATAAACAAATTGATAAGGTTTATAATGGATTACAACGCTAA
    60
    120
    180
    240
    300
    360
    420
    471

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0759 [new locus tag: NWMN_RS04295 ]
  • symbol: NWMN_0759
  • description: hypothetical protein
  • length: 156
  • theoretical pI: 9.68999
  • theoretical MW: 17716.9
  • GRAVY: -0.628205

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined efb-c; Extracellular fibrinogen binding protein C terminal (PF12199; HMM-score: 15)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: -0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide SP(Sec/SPI) length 26 aa
    • SP(Sec/SPI): 0.989266
    • TAT(Tat/SPI): 0.002182
    • LIPO(Sec/SPII): 0.002696
    • Cleavage Site: CS pos: 26-27. ANA-LV. Pr: 0.9185
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRKVLVLTMGVICATQLWHSNHANALVTESGANDTKQFTEIVSEEKVITVEHAQINIFQSNSNSNLMEFNILTMGGKSGAMVGYSEIDSSHFTDRDKRVIRRDHVKEAQSLVENYKDTQSADARMKAKQKVNTLSKPHQNYFNKQIDKVYNGLQR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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