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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1235 [new locus tag: NWMN_RS06975 ]
- pan locus tag?: SAUPAN003692000
- symbol: NWMN_1235
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1235 [new locus tag: NWMN_RS06975 ]
- symbol: NWMN_1235
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1358985..1359173
- length: 189
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330737 NCBI
- RefSeq: YP_001332269 NCBI
- BioCyc:
- MicrobesOnline: 3706787 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGAACATTTCAAATGAAAATACAGTCACATTAATTGCAGTAATTATCGCAATTATCATT
GGTATTTTCCTACAAATATTTTTCAAATTACCATTAATAGTGACGGCAGTACTATCTATT
TTATTGGGTATCTTTGTAGGCTTTATCGTTTACTTGATTGTTTCGTTTTATAATAAGCGA
AAAAATTAG60
120
180
189
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1235 [new locus tag: NWMN_RS06975 ]
- symbol: NWMN_1235
- description: hypothetical protein
- length: 62
- theoretical pI: 10.3273
- theoretical MW: 6956.53
- GRAVY: 1.55323
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids MFS transporter, sugar porter (SP) family (TIGR00879; HMM-score: 12.5)Transport and binding proteins Carbohydrates, organic alcohols, and acids bile acid transporter (TIGR00841; HMM-score: 11.5)and 4 morecxxc_20_cxxc protein (TIGR04104; HMM-score: 8.3)Protein fate Protein and peptide secretion and trafficking type VII secretion protein EssA (TIGR03927; HMM-score: 7.5)chain length determinant protein EpsF (TIGR03017; HMM-score: 6.8)cobalt transporter subunit CbtB (proposed) (TIGR02459; HMM-score: 6.2)
- TheSEED: data available for N315, NCTC8325, USA300_FPR3757
- PFAM: MviN_MATE (CL0222) Polysacc_synt_C; Polysaccharide biosynthesis C-terminal domain (PF14667; HMM-score: 17.6)no clan defined DUF4396; Domain of unknown function (DUF4396) (PF14342; HMM-score: 17.3)Apoptosis-Inhib (CL0453) Bax1-I; Inhibitor of apoptosis-promoting Bax1 (PF01027; HMM-score: 16.1)no clan defined DUF2613; Protein of unknown function (DUF2613) (PF11021; HMM-score: 14.7)and 19 moreRseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 12.2)DUF4191; Domain of unknown function (DUF4191) (PF13829; HMM-score: 11.9)DUF2583; Protein of unknown function (DUF2583) (PF10762; HMM-score: 11.6)Peptidase_AD (CL0130) Peptidase_A24; Type IV leader peptidase family (PF01478; HMM-score: 11.5)O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 11.5)no clan defined Myc_target_1; Myc target protein 1 (PF15179; HMM-score: 10.8)Yip1 (CL0112) DUF1129; Protein of unknown function (DUF1129) (PF06570; HMM-score: 10.3)no clan defined DUF973; Protein of unknown function (DUF973) (PF06157; HMM-score: 10.1)DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 9.9)ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 8.6)no clan defined DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 8.4)Ninjurin; Ninjurin (PF04923; HMM-score: 8)Phage_holin_6_1; Bacteriophage holin of superfamily 6 (Holin_LLH) (PF09682; HMM-score: 7.5)IT (CL0182) CitMHS; Citrate transporter (PF03600; HMM-score: 7.3)no clan defined LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 7.1)Halogen_Hydrol; 5-bromo-4-chloroindolyl phosphate hydrolysis protein (PF10112; HMM-score: 7)DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 6.6)Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 6.5)no clan defined IncA; IncA protein (PF04156; HMM-score: 6.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001472
- TAT(Tat/SPI): 0.000247
- LIPO(Sec/SPII): 0.052589
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNISNENTVTLIAVIIAIIIGIFLQIFFKLPLIVTAVLSILLGIFVGFIVYLIVSFYNKRKN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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