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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1238 [new locus tag: NWMN_RS06990 ]
- pan locus tag?: SAUPAN003697000
- symbol: NWMN_1238
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1238 [new locus tag: NWMN_RS06990 ]
- symbol: NWMN_1238
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1361158..1361748
- length: 591
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330739 NCBI
- RefSeq: YP_001332272 NCBI
- BioCyc:
- MicrobesOnline: 3706790 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541TTGAGAGTGAATGAAATGAATGCTAAAGAACAATTAGTGGACAATTTAATGAAAACATCA
TCGCAATTATTTAAATTTCACGGTGAAGTTGCCATGCAGCTTTTCTTAAATGATGAATTA
AAATTACCTTCTATTGTTGAAATATGCGTGGAACGTAAGCGTTTAAGTGATATTGTGAAA
GTTATTCCGCAATCATATGCGTTACTATACATAGATAAGCAAGATCAAGCAATAGCTAAA
GAAGATTTATCACTTTCAAAAATTGCAAAAGTTTATGTGCAATATGATGATACAACAATA
ATGAGTATTTTCGTTTATGATGTAGTAAACGATGAATGGATTTTTAGATTGGATCCGAAT
ATACGTATACCTAAGAGTAACATATACTTCCATAGTTTAAATTGGGATGTGGATTATATT
AAACCGGAGATCGTTCTAATGTATGATCTAATGCAACACCATCAGTATCATCATTATTCC
AATTATAAACGAGTCATAGATGCATTAAGCTACTATCAATTTTTTATTTTAAAATTTGTA
GTAGGTGAGCAACGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1238 [new locus tag: NWMN_RS06990 ]
- symbol: NWMN_1238
- description: hypothetical protein
- length: 196
- theoretical pI: 6.51601
- theoretical MW: 23380.9
- GRAVY: -0.203571
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002184
- TAT(Tat/SPI): 0.000192
- LIPO(Sec/SPII): 0.000391
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MRVNEMNAKEQLVDNLMKTSSQLFKFHGEVAMQLFLNDELKLPSIVEICVERKRLSDIVKVIPQSYALLYIDKQDQAIAKEDLSLSKIAKVYVQYDDTTIMSIFVYDVVNDEWIFRLDPNIRIPKSNIYFHSLNWDVDYIKPEIVLMYDLMQHHQYHHYSNYKRVIDALSYYQFFILKFVVGEQRIKDAIQRTINN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator: CcpA regulon
CcpA (TF) important in Carbon catabolism; RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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