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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1874 [new locus tag: NWMN_RS15460 ]
  • pan locus tag?: SAUPAN005015000
  • symbol: NWMN_1874
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1874 [new locus tag: NWMN_RS15460 ]
  • symbol: NWMN_1874
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2088833..2089141
  • length: 309
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    GTGAAGAACCATACAAATATAATTAATATCTTATTAGTTATAGTCAACTCATTAACTCAT
    TTTCTAACTCTAAACACCTCATTTTTTAATAATTCAGCATCGGATTTCTGTTTTATCATA
    GGGGCTATATTTTTCTTAATCGGAATTTTTGTTGCAATATACGGTATGAAGCGAGCAACA
    TATTGGTTAAACTTATTGATTTTATTTACCAATATTTTTTATTTTCTACACTTCTGTGTG
    TTACTTTTGTTAAAATATATAGGATTTAAATTATTTATTTATGAAGGGTGTGTATTGTTA
    TTTACCTAA
    60
    120
    180
    240
    300
    309

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1874 [new locus tag: NWMN_RS15460 ]
  • symbol: NWMN_1874
  • description: hypothetical protein
  • length: 102
  • theoretical pI: 8.84585
  • theoretical MW: 11893.3
  • GRAVY: 1.24706

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for N315
  • PFAM:
    no clan defined YtpI; YtpI-like protein (PF14007; HMM-score: 19.3)
    DUF202; Domain of unknown function (DUF202) (PF02656; HMM-score: 15.9)
    and 2 more
    Tetraspannin (CL0347) Tetraspannin; Tetraspanin family (PF00335; HMM-score: 8.4)
    no clan defined CRPA; Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) (PF05745; HMM-score: 7.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016462
    • TAT(Tat/SPI): 0.000279
    • LIPO(Sec/SPII): 0.051813
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKNHTNIINILLVIVNSLTHFLTLNTSFFNNSASDFCFIIGAIFFLIGIFVAIYGMKRATYWLNLLILFTNIFYFLHFCVLLLLKYIGFKLFIYEGCVLLFT

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]