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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2365 [new locus tag: NWMN_RS13630 ]
  • pan locus tag?: SAUPAN006028000
  • symbol: NWMN_2365
  • pan gene symbol?: cntM
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2365 [new locus tag: NWMN_RS13630 ]
  • symbol: NWMN_2365
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2602429..2603730
  • length: 1302
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGTCTAAATTATTAATGATAGGCACTGGTCCGGTCGCAATCCAATTAGCGAATATTTGC
    TATTTAAAATCAGATTATGAGATTGATATGGTTGGACGTGCCTCAACATCAGAAAAATCA
    AAACGCTTATATCAAGCGTATAAAAAAGAGAAACAATTTGAAGTCAAAATACAAAACGAG
    GCGCATCAACATCTGGAAGGTAAGTTTGAAATTAATCGTTTGTATAAAGATGTTAAAAAC
    GTTAAGGGTGAATACGAAACGGTTGTCATGGCATGCACAGCAGATGCTTATTATGACACA
    CTACAGCAATTGTCGTTAGAAACTTTGCAAAGTGTCAAACATGTCATTTTAATATCACCG
    ACATTTGGTTCGCAAATGATTGTCGAACAATTTATGTCTAAATTTAATAAAGATATCGAA
    GTGATTTCATTCTCAACTTATCTTGGCGATACACGTATTGTTGATAAAGAAGCGCCTAAT
    CATGTGTTGACAACAGGTGTAAAAAAGAAATTGTACATGGGATCGACACATTCAAACTCA
    ACAATGTGTCAACGAATCTCTGCTTTAGCTGAGCAATTGAAGATTCAATTAGAAGTCGTT
    GAATCGCCACTGCATGCTGAAACGCGAAACAGTTCGCTTTATGTGCACCCACCACTATTT
    ATGAATGACTTTTCATTGAAAGCCATTTTCGAAGGAACAGATGTACCGGTTTATGTGTAT
    AAGTTATTTCCTGAAGGACCGATAACGATGACACTAATCCGTGAAATGCGTTTAATGTGG
    AAGGAAATGATGGTTATTTTACAAGCATTTAGAGTGCCGTCAGTCAACCTGCTTCAATTT
    ATGGTGAAGGAAAATTATCCAGTACGTCCTGAAACTTTGGATGAAGGTGATATTGAGCAT
    TTCGAAATCTTGCCAGATATCTTACAAGAATATCTGCTTTATGTAAGATATACCGCAATC
    CTCATTGATCCATTTTCACAGCCAGACGAAAACGGACATTACTTTGATTTTTCAGCTGTA
    CCATTTAAGCAAGTCTATAAAAATGAACAGGATGTTGTTCAAATTCCAAGAATGCCAAGT
    GAAGATTATTACAGAACGGCGATGATTCAGCATATTGGGAAAATGCTAGGTATCAAAACG
    CCAATGATTGATCAGTTCCTAACTCGCTATGAAGCAAGTTGCCAGGCGTACAAGGATATG
    CATCAAGATCAACACTTATCTTCTCAATTTAATACAAATCTATTTGAAGGAGATAAAGCA
    CTCGTCACAAAATTTTTGGAAATCAATAGAACGCTTTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1302

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_2365 [new locus tag: NWMN_RS13630 ]
  • symbol: NWMN_2365
  • description: hypothetical protein
  • length: 433
  • theoretical pI: 6.10426
  • theoretical MW: 50135.5
  • GRAVY: -0.264434

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:  
    FIG018700: hypothetical protein
  • PFAM:
    no clan defined Staph_opine_DH; Staphylopine dehydrogenase (PF10100; HMM-score: 597)
    and 3 more
    6PGD_C (CL0106) Octopine_DH; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain (PF02317; HMM-score: 24.3)
    ATP-grasp (CL0179) ATP-grasp_4; ATP-grasp domain (PF13535; HMM-score: 14.9)
    LTXXQ-like (CL0515) DUF3826; Protein of unknown function (DUF3826) (PF12875; HMM-score: 13.6)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.090104
    • TAT(Tat/SPI): 0.002864
    • LIPO(Sec/SPII): 0.055501
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MSKLLMIGTGPVAIQLANICYLKSDYEIDMVGRASTSEKSKRLYQAYKKEKQFEVKIQNEAHQHLEGKFEINRLYKDVKNVKGEYETVVMACTADAYYDTLQQLSLETLQSVKHVILISPTFGSQMIVEQFMSKFNKDIEVISFSTYLGDTRIVDKEAPNHVLTTGVKKKLYMGSTHSNSTMCQRISALAEQLKIQLEVVESPLHAETRNSSLYVHPPLFMNDFSLKAIFEGTDVPVYVYKLFPEGPITMTLIREMRLMWKEMMVILQAFRVPSVNLLQFMVKENYPVRPETLDEGDIEHFEILPDILQEYLLYVRYTAILIDPFSQPDENGHYFDFSAVPFKQVYKNEQDVVQIPRMPSEDYYRTAMIQHIGKMLGIKTPMIDQFLTRYEASCQAYKDMHQDQHLSSQFNTNLFEGDKALVTKFLEINRTLS

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]