Jump to navigation
Jump to search
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS00445 [old locus tag: NWMN_0079 ]
- pan locus tag?: SAUPAN000946000
- symbol: NWMN_RS00445
- pan gene symbol?: —
- synonym:
- product: GntR family transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS00445 [old locus tag: NWMN_0079 ]
- symbol: NWMN_RS00445
- product: GntR family transcriptional regulator
- replicon: chromosome
- strand: -
- coordinates: 101347..102102
- length: 756
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721ATGGAGGTTGTCTACGTGACGCAAACACAACCAAAATTTTTAACGATTTATAATACGTTA
TATAAAGAAATTCAAATAGGAAAATATCCGAGTGGCCATGCATTACCTACTGAAAAGGAA
CTTTGTGCGCGCTTTGATGTCAGTCGTATGACTTTGCGCCAAGCTATAAAATTGTTAGCC
GAAGATGGCATCGTAGAGAGTACAAGAGGGAAGGGACACTTTGTTATTCCACAAACAAAT
GCCCAACACGCTTCAAGTATGGATCAATTTAAGCATCCACTTGATCAAATATTGCTAGCT
CGCGTATCTATGTCATCAATTAATTATCGTGTTGATTTAGAAAGTGAATATACAAATCAT
TTGTTTGCAAACCATCCTTCTGCCGTCATTGCAATGGAACGCTATTATCAAAAAAAGGAC
AATCATTCTAAGCAAGCTGATGCATTTTGCTTTACCTTTATACCGTTAAATGTCATTGAC
ACATTTAAAGTGAATACACAAAACGAAGACGACATGAAGACATTCGTTGAGCAAACGATT
TATAGCAATGCATATCAATCAGATTTAAAAATGTCTATTACCAAAGCGCCCCACTTCAAA
AATCATAGTCACGTGTTTGATGGTGATACACATTGTTGGCTGATTATTGAAACACTGTAC
GCACAAACACCTTATCCAATTATGATTAATAAGTGGTATATTCCACAGGAAATATCTGAA
TTAACACTGACACGTATAAGACAATCGGATTATTAA60
120
180
240
300
360
420
480
540
600
660
720
756
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS00445 [old locus tag: NWMN_0079 ]
- symbol: NWMN_RS00445
- description: GntR family transcriptional regulator
- length: 251
- theoretical pI: 6.9119
- theoretical MW: 29171
- GRAVY: -0.41992
⊟Function[edit | edit source]
- TIGRFAM: Regulatory functions DNA interactions trehalose operon repressor (TIGR02404; HMM-score: 68.1)Transport and binding proteins Anions phosphonate metabolism transcriptional regulator PhnF (TIGR02325; HMM-score: 55.9)Regulatory functions DNA interactions phosphonate metabolism transcriptional regulator PhnF (TIGR02325; HMM-score: 55.9)Energy metabolism Amino acids and amines histidine utilization repressor (TIGR02018; HMM-score: 55)Regulatory functions DNA interactions histidine utilization repressor (TIGR02018; HMM-score: 55)and 7 moreRegulatory functions DNA interactions phosphonate utilization transcriptional regulator PhnR (TIGR03337; HMM-score: 42)Fatty acid and phospholipid metabolism Biosynthesis fatty acid metabolism transcriptional regulator FadR (TIGR02812; HMM-score: 35.8)Fatty acid and phospholipid metabolism Degradation fatty acid metabolism transcriptional regulator FadR (TIGR02812; HMM-score: 35.8)Regulatory functions DNA interactions fatty acid metabolism transcriptional regulator FadR (TIGR02812; HMM-score: 35.8)phosphonate utilization associated transcriptional regulator (TIGR03338; HMM-score: 24.7)Unknown function General Rrf2 family protein (TIGR00738; HMM-score: 14.9)Regulatory functions DNA interactions biotin operon repressor (TIGR00122; HMM-score: 12.7)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: HTH (CL0123) GntR; Bacterial regulatory proteins, gntR family (PF00392; HMM-score: 62.7)and 12 moreHTH_11; HTH domain (PF08279; HMM-score: 29.2)Rrf2; Transcriptional regulator (PF02082; HMM-score: 21.6)HTH_20; Helix-turn-helix domain (PF12840; HMM-score: 20.8)HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 20)HTH_41; Helix-turn-helix domain (PF14502; HMM-score: 17)MarR_2; MarR family (PF12802; HMM-score: 16.5)HTH_36; Helix-turn-helix domain (PF13730; HMM-score: 13.9)HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 13.8)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 13.7)no clan defined PASTA; PASTA domain (PF03793; HMM-score: 13.4)HTH (CL0123) HTH_Crp_2; Crp-like helix-turn-helix domain (PF13545; HMM-score: 13.2)HTH_29; Winged helix-turn helix (PF13551; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00499
- TAT(Tat/SPI): 0.000149
- LIPO(Sec/SPII): 0.000385
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEVVYVTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLARVSMSSINYRVDLESEYTNHLFANHPSAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNEDDMKTFVEQTIYSNAYQSDLKMSITKAPHFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISELTLTRIRQSDY
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.