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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS00690 [old locus tag: NWMN_0125 ]
  • pan locus tag?: SAUPAN001020000
  • symbol: NWMN_RS00690
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS00690 [old locus tag: NWMN_0125 ]
  • symbol: NWMN_RS00690
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 157182..157661
  • length: 480
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (157182..157661) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0125

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGGTATATTCATTTATGCTGGAATTATCGGTGGCTTGTTATCTGGAATTGTAAAATTA
    GGTTGGGAGGTCATGTTTCCACCTCGCACACCAGAACGTAATGCAACGAACCCACCTCAA
    GAGTTATTGCAACAATTAGGATTTAGTAGTGAGTTTACGCATCAAACATATACATTTTCA
    AATATGGAATTGCCTTGGGTAAGCTTTATTGTCCACTTTAGTTTTTCTATCGTCATTGCA
    ATTATTTACTGCATATTAGTTAAAAAATACGCTTACTTAGCAATGGGACAAGGTGCTGTT
    TTTGGTATTGCTATTTGGGTATTATTCCACCTTATCATTATGCCAATCATGCATACTGTA
    CCTGCTGTGTGGGATCAACCATTCCAAGAGCATCTGTCAGAATTCTTTGGCCATATCGTC
    TGGATGATGACAATTGAATTAGTGCGACAACATTTTGTCTATCGCTATAAATTAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS00690 [old locus tag: NWMN_0125 ]
  • symbol: NWMN_RS00690
  • description: hypothetical protein
  • length: 159
  • theoretical pI: 7.23127
  • theoretical MW: 18415.7
  • GRAVY: 0.546541

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_0125
  • PFAM:
    no clan defined DUF1440; Protein of unknown function (DUF1440) (PF07274; HMM-score: 213.8)
    and 3 more
    YqhR; Conserved membrane protein YqhR (PF11085; HMM-score: 17.2)
    DUF1761; Protein of unknown function (DUF1761) (PF08570; HMM-score: 16.9)
    DUF6789; Family of unknown function (DUF6789) (PF20587; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0012
    • Cytoplasmic Membrane Score: 0.9983
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0004
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.169662
    • TAT(Tat/SPI): 0.006864
    • LIPO(Sec/SPII): 0.048968
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGIFIYAGIIGGLLSGIVKLGWEVMFPPRTPERNATNPPQELLQQLGFSSEFTHQTYTFSNMELPWVSFIVHFSFSIVIAIIYCILVKKYAYLAMGQGAVFGIAIWVLFHLIIMPIMHTVPAVWDQPFQEHLSEFFGHIVWMMTIELVRQHFVYRYKLN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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