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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05290 [old locus tag: NWMN_0945 ]
  • pan locus tag?: SAUPAN003292000
  • symbol: NWMN_RS05290
  • pan gene symbol?: thiV
  • synonym:
  • product: thiamine ABC transporter permease

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS05290 [old locus tag: NWMN_0945 ]
  • symbol: NWMN_RS05290
  • product: thiamine ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1049808..1050383
  • length: 576
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1049808..1050383) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0945

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGTCAAAAGGTTTAAAGCTATCTGAAATACTAGTAACCGTACTTATTTCAGTAGTATTC
    GCAGTTATTTACAATTTATGGTGGTTTGTTTACAATGGTGTGCAAGCTACAGGCCTTCAC
    CTCGAACAATTAACAAACGGGGTTTGGTTCATGGCAGCGATTGTCTGCTATCTAATTATT
    CCAAAACCAGGTATTGCTTTACTGGCTGAATTTGCTGCAGGTGCCGGCGAAACTATCATT
    ATGGGTCGTTTCGATATTCCGACAATCGTTTACGCTTTTATACAAGGTTTAGCGTGTGAA
    CTTGTCTTTGCAATTTTTAAATATCAATCACGTTCAGTTATGGTAGCTATGTTAGCAGGT
    TTTTGTACAGCAATCGCGGCTTTCCCGATAGATTATTTCTATGGTTATTTAAATGAAGTT
    GCAGGTTGGAACTTAACATTATTCATCGTATTTAGATTAATTAGTGGTGCAGTAGTCGCC
    GGCGTCCTATCTTACCTTTTAGTAAAAGCTTTAGATAAGACAGGCGTAACAAAATTATTT
    AGACCAGCTGCTAAAGAAGATTACGACAACTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    576


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS05290 [old locus tag: NWMN_0945 ]
  • symbol: NWMN_RS05290
  • description: thiamine ABC transporter permease
  • length: 191
  • theoretical pI: 7.172
  • theoretical MW: 21001.9
  • GRAVY: 0.928796

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_0945
  • PFAM:
    no clan defined ABC_cobalt; ABC-type cobalt transport system, permease component (PF09819; HMM-score: 113.1)
    and 1 more
    DUF3082; Protein of unknown function (DUF3082) (PF11282; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.996
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0035
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007353
    • TAT(Tat/SPI): 0.000184
    • LIPO(Sec/SPII): 0.005969
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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