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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS06420 [old locus tag: NWMN_1138 ]
  • pan locus tag?: SAUPAN003512000
  • symbol: NWMN_RS06420
  • pan gene symbol?: fapR
  • synonym:
  • product: transcription factor

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS06420 [old locus tag: NWMN_1138 ]
  • symbol: NWMN_RS06420
  • product: transcription factor
  • replicon: chromosome
  • strand: +
  • coordinates: 1248050..1248622
  • length: 573
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1248050..1248622) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1138

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAGGGGTGAGACGTTGAAACTAAAGAAAGATAAACGTAGAGAAGCAATCAGACAACAA
    ATTGATAGCAATCCCTTCATCACAGACCATGAACTAAGCGACTTATTTCAAGTGAGTATA
    CAAACAATTCGTTTAGATCGCACTTATTTAAACATACCAGAATTAAGGAAGCGTATTAAA
    TTAGTTGCTGAAAAGAATTATGACCAAATAAGTTCTATTGAAGAACAAGAATTTATTGGT
    GATTTGATTCAAGTCAATCCAAATGTTAAAGCGCAATCAATTTTAGATATTACATCGGAT
    TCTGTTTTTCATAAAACTGGAATTGCGCGTGGTCATGTGCTGTTTGCTCAGGCAAATTCG
    TTATGTGTTGCGCTAATTAAGCAACCAACAGTTTTAACTCATGAGAGTAGCATTCAATTT
    ATTGAAAAAGTAAAATTAAATGATACGGTAAGAGCAGAAGCACGAGTTGTAAATCAAACT
    GCAAAACATTATTACGTCGAAGTAAAGTCATATGTTAAACATACATTAGTTTTCAAAGGA
    AATTTTAAAATGTTTTATGATAAGCGAGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    573

⊟Protein[edit | edit source]

Protein Data Bank: 4A0X
Protein Data Bank: 4A0Y
Protein Data Bank: 4A0Z
Protein Data Bank: 4A12

⊟General[edit | edit source]

  • locus tag: NWMN_RS06420 [old locus tag: NWMN_1138 ]
  • symbol: NWMN_RS06420
  • description: transcription factor
  • length: 190
  • theoretical pI: 9.98992
  • theoretical MW: 21990.1
  • GRAVY: -0.406842

⊟Function[edit | edit source]

  • TIGRFAM:
    phenylacetic acid degradation protein PaaD (TIGR02286; HMM-score: 19.3)
    and 1 more
    uncharacterized domain 1 (TIGR00369; HMM-score: 12.6)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    HotDog (CL0050) 4HBT; Thioesterase superfamily (PF03061; HMM-score: 24.4)
    MaoC_dehydratas; MaoC like domain (PF01575; HMM-score: 21.1)
    and 3 more
    HTH (CL0123) HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 18.4)
    HTH_11; HTH domain (PF08279; HMM-score: 14.2)
    no clan defined Sigma54_AID; Sigma-54 factor, Activator interacting domain (AID) (PF00309; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • genes regulated by FapR*, TF important in Fatty acid biosynthesis: see NWMN_1138

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001346
    • TAT(Tat/SPI): 0.000132
    • LIPO(Sec/SPII): 0.000251
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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