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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12980 [old locus tag: NWMN_2255 ]
  • pan locus tag?: SAUPAN005855000
  • symbol: NWMN_RS12980
  • pan gene symbol?: —
  • synonym:
  • product: TetR family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS12980 [old locus tag: NWMN_2255 ]
  • symbol: NWMN_RS12980
  • product: TetR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2477399..2477950
  • length: 552
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2477399..2477950) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2255

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATAT
    CCTTTTCAAGAAATATCCACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACT
    TTTTATGATTATTACAAAGATAAATTTGATTTATTGGATACCATCAACTCAAAGCATAAG
    GAAAAATTCCAATTTCTTCTAAGCGCGCTACATCATAATTTCGAAAATATTAAACAGGAT
    AAGCTTAAACTTTATAAATTCTTCATTATTATTGCTAAGTATATCAAGCACAATGAGCAG
    TTTTTCAAAGACATTTTAGTTACCTATCCAATGAAAACATTATTCATAGACTATATAAAT
    TTAGCGAGAGATTACTATCAACAAATTATGAATGACTATAGTACTACAGTAACCAATAAA
    CAGCTTTATGTTACATATATCATAGGCGGTCAAGCTGGGGTGTTTATTAATTGGCTTTCG
    AATGGTTGTAATGAATCACCTGAAGAAGTTGCTGACATTTTATTGGCTAATACGATTAAA
    CTTCAAAACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    552

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS12980 [old locus tag: NWMN_2255 ]
  • symbol: NWMN_RS12980
  • description: TetR family transcriptional regulator
  • length: 183
  • theoretical pI: 8.02844
  • theoretical MW: 21726
  • GRAVY: -0.257923

⊟Function[edit | edit source]

  • TIGRFAM:
    probable dihydroxyacetone kinase regulator (TIGR02366; HMM-score: 42.7)
    and 2 more
    Signal transduction Regulatory functions DNA interactions mycofactocin system transcriptional regulator (TIGR03968; HMM-score: 18.9)
    glutaredoxin (TIGR02180; HMM-score: 12.7)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    HTH (CL0123) TetR_N; Bacterial regulatory proteins, tetR family (PF00440; HMM-score: 26.3)
    no clan defined TetR_C_8; Transcriptional regulator C-terminal region (PF14278; HMM-score: 23.4)
    and 2 more
    HTH (CL0123) HTH_Tnp_1_2; Helix-turn-helix of insertion element transposase (PF13022; HMM-score: 19.1)
    HTH_23; Homeodomain-like domain (PF13384; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.028714
    • TAT(Tat/SPI): 0.000352
    • LIPO(Sec/SPII): 0.003528
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRQAKIEIQNALVDLMAEYPFQEISTKMICAYCNINRSTFYDYYKDKFDLLDTINSKHKEKFQFLLSALHHNFENIKQDKLKLYKFFIIIAKYIKHNEQFFKDILVTYPMKTLFIDYINLARDYYQQIMNDYSTTVTNKQLYVTYIIGGQAGVFINWLSNGCNESPEEVADILLANTIKLQN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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