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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS13420 [old locus tag: NWMN_2330 ]
- pan locus tag?: SAUPAN005978000
- symbol: NWMN_RS13420
- pan gene symbol?: —
- synonym:
- product: GtrA family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS13420 [old locus tag: NWMN_2330 ]
- symbol: NWMN_RS13420
- product: GtrA family protein
- replicon: chromosome
- strand: -
- coordinates: 2560683..2561069
- length: 387
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGAAACTAACACAAACGCATGCTGAAATTTTAAAATTTATCATTGTTGGCGGCATTAAT
ACGTTAAATTATTATGTTGTCTATTTATTGCTGTTAAAATTATTACACATTGAATATATG
ATTAGTCATATTACCGGATTTCTAGTCGCTTTTGTGATTTCATATTATTTGAATTGTTAT
TTTGTTTACAGGGTAAAACCTACTTGGAGAAAATTCATTAGTTTTCCAATTACGCAGATT
GTCAACGTAAGCTTACAAACAGTTTTATTATATGTATTTGTATCCTGGCTAAATTTGCCA
GCAGAAATTGCACCATTTGCTGGTTTAATTATTACGATACCCATCACATTTATATTATCT
AAATGGATTTTAAAAGATAGCAATTAA60
120
180
240
300
360
387
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS13420 [old locus tag: NWMN_2330 ]
- symbol: NWMN_RS13420
- description: GtrA family protein
- length: 128
- theoretical pI: 9.70953
- theoretical MW: 14892.9
- GRAVY: 0.9125
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: no clan defined GtrA; GtrA-like protein (PF04138; HMM-score: 82.7)and 2 moreMNHE; Na+/H+ ion antiporter subunit (PF01899; HMM-score: 8.2)DUF4229; Protein of unknown function (DUF4229) (PF14012; HMM-score: 8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000708
- TAT(Tat/SPI): 0.000085
- LIPO(Sec/SPII): 0.012672
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLIITIPITFILSKWILKDSN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: SigB see NWMN_2330
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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