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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0057 [new locus tag: SA_RS00430 ]
  • pan locus tag?: SAUPAN000444000
  • symbol: ccrB
  • pan gene symbol?: ccrB
  • synonym:
  • product: cassette chromosome recombinase B

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0057 [new locus tag: SA_RS00430 ]
  • symbol: ccrB
  • product: cassette chromosome recombinase B
  • replicon: chromosome
  • strand: -
  • coordinates: 63397..65025
  • length: 1629
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAA
    AGCACAGAAGGTTATAGTATCGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTC
    CATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTATTTCAGGTAAATCTATGAAT
    CGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
    GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGAT
    TTACACAAACAAAATGTCGAATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCA
    TCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAGAATTCGAACGTAATAACATT
    GTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
    TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACAT
    GAAGCTAATATTGTGAAATATATATTCGAGTCCTATGCCAAAGGCCATGGCTATCGTAAA
    ATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAAAGGGTAAACCTTTTAGTATT
    AGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
    TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAA
    GGTAAGCATTCCCCCATTATTAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAA
    CAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGAATCTGCTTACAGGCATTATT
    CACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC
    GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAA
    GTATGTTCGGCAAACAGTGTAAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATA
    CTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAGTAACACACGTCAATCAAGAA
    AATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
    GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACA
    TCAGTAATCAGACCAAGTATTCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAA
    ATCAACCAACTCAAAAATCAACAAAATGAAGATAAGCCTTTATTTGATGCCAAAGAAATC
    AGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
    GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAA
    CAATTCTATGTCACACTCAAACTTAATAACGAAATCATAAAACAACTTTTCAATAATAAA
    CAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTTTGCCCCAAACACTATATCTT
    ACTATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1629


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0057 [new locus tag: SA_RS00430 ]
  • symbol: CcrB
  • description: cassette chromosome recombinase B
  • length: 542
  • theoretical pI: 9.86187
  • theoretical MW: 62664.4
  • GRAVY: -0.628229

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Site-specific recombinase
  • PFAM:
    no clan defined Resolvase; Resolvase, N terminal domain (PF00239; HMM-score: 140.2)
    and 15 more
    HTH (CL0123) Recombinase; Recombinase (PF07508; HMM-score: 91.4)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_recom; Recombinase zinc beta ribbon domain (PF13408; HMM-score: 58.3)
    Ogr_Delta; Ogr/Delta-like zinc finger (PF04606; HMM-score: 38.2)
    Concanavalin (CL0004) Laminin_II; Laminin Domain II (PF06009; HMM-score: 17.2)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_Top1; Topoisomerase DNA binding C4 zinc finger (PF01396; HMM-score: 15.2)
    FdhE_central; FdhE, central domain (PF24859; HMM-score: 13.5)
    PLA2 (CL0629) Phospholip_A2_4; Phospholipase A2-like domain (PF08398; HMM-score: 13.2)
    HTH (CL0123) HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 12.7)
    MazG (CL0231) Nuf2_DHR10-like; Nuf2, DHR10-like domain (PF18595; HMM-score: 12.5)
    Spectrin (CL0743) ANC1_spectrin; Nuclear anchorage protein 1, spectrin repeat (PF24531; HMM-score: 12.1)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_GRF_2; GRF-like zinc ribbon domain (PF23549; HMM-score: 11.2)
    no clan defined TMPIT; TMPIT-like protein (PF07851; HMM-score: 10.9)
    DUF3268; zinc-finger-containing domain (PF11672; HMM-score: 10.4)
    Tho2; Transcription factor/nuclear export subunit protein 2 (PF11262; HMM-score: 10.1)
    DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 9.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9945
    • Cytoplasmic Membrane Score: 0.0028
    • Cell wall & surface Score: 0.0008
    • Extracellular Score: 0.0019
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018082
    • TAT(Tat/SPI): 0.001108
    • LIPO(Sec/SPII): 0.003231
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLKALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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