PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA0066 [new locus tag: SA_RS00475 ]
• pan locus tag^?: SAUPAN000454000
• symbol: kdpE
• pan gene symbol^?: kdpE
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0066 [new locus tag: SA_RS00475 ]
• symbol: kdpE
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 73509..74204
• length: 696
• essential: no DEG

⊟Accession numbers

• Gene ID: 1122840 NCBI
• RefSeq: NP_373306 NCBI
• BioCyc: see SA_RS00475
• MicrobesOnline: 102332 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

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  ATGAAAACAACATTATTGGTCGTTGAAGATGATGAAGCGATTTTACATTTAATCGATGTT
  GCGCTAACTATGAATTATTATAAAGTGGTTACGGCGAAGACGGGGAAAGAAGCGGACTTT
  CGCCTAAGAACAGAACAACCAGATATTATCTTATTAGATTTAGGCTTACCAGATATTGAT
  GGTTTATCTCTCATTCAGCAATTCAGAGACTTTGTGGACACACCTATTATTGTGATTAGT
  GCACGAACAGAGGAACAAACCATTGTCGAAGTATTAGATCGCGGTGCCAATGATTATATG
  ACTAAGCCTTTCAATATCGATGAGTTAAGAGCACGTATCAGAGTAGCATTACGTATGTCA
  CGTTCTACTGAGACAATTCAAAGTCGTTTCACAAATGGTCCATTAACCATTGATTTCGAT
  GCGAAATCAGTCCTTGTCAATGAACAGTCCGTACATCTAACACCGAATGAATTCCAACTC
  CTAACGATATTATGCCATCATGTCGGCAAAGTATTAACCTATCAAGTGTTATTAAAATCA
  CTCTATGGCTATGTCAATCATACAGAAATGGCTGCCTTACGTGTACATATGGCCTCTTTA
  CGTAAAAAGTTGAATTATACGCAAGACCCAAACACTGAAAAGAAATTAATCATCACACAT
  CCTAGAATCGGCTACCAAATGCAACACTTAGAATAA
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⊟Protein

⊟General

• locus tag: SA0066 [new locus tag: SA_RS00475 ]
• symbol: KdpE
• description: hypothetical protein
• length: 231
• theoretical pI: 6.51567
• theoretical MW: 26491.5
• GRAVY: -0.134632

⊟Function

• TIGRFAM:
  Signal transduction Regulatory functions DNA interactions phosphate regulon transcriptional regulatory protein PhoB (TIGR02154; HMM-score: 161.9)
  Signal transduction Signal transduction Two-component systems phosphate regulon transcriptional regulatory protein PhoB (TIGR02154; HMM-score: 161.9)
  and 8 more
  Signal transduction Regulatory functions DNA interactions heavy metal response regulator (TIGR01387; HMM-score: 121.3)
  proteobacterial dedicated sortase system response regulator (TIGR03787; HMM-score: 90.9)
  Metabolism Central intermediary metabolism Nitrogen metabolism nitrogen regulation protein NR(I) (TIGR01818; HMM-score: 71.7)
  Signal transduction Regulatory functions DNA interactions nitrogen regulation protein NR(I) (TIGR01818; HMM-score: 71.7)
  Signal transduction Signal transduction Two-component systems nitrogen regulation protein NR(I) (TIGR01818; HMM-score: 71.7)
  Signal transduction Signal transduction Two-component systems TMAO reductase sytem sensor TorS (TIGR02956; EC 2.7.13.3; HMM-score: 59.7)
  Cellular processes Cellular processes Sporulation and germination sporulation transcription factor Spo0A (TIGR02875; HMM-score: 52.1)
  Signal transduction Regulatory functions DNA interactions PEP-CTERM-box response regulator transcription factor (TIGR02915; HMM-score: 49.8)
• TheSEED  :
  • DNA-binding response regulator KdpE
• PFAM:
  CheY (CL0304) Response_reg; Response regulator receiver domain (PF00072; HMM-score: 92.7)
  and 1 more
  HTH (CL0123) Trans_reg_C; Transcriptional regulatory protein, C terminal (PF00486; HMM-score: 71.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 9.97
  • Cytoplasmic Membrane Score: 0
  • Cellwall Score: 0.01
  • Extracellular Score: 0.02
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002415
  • TAT(Tat/SPI): 0.000103
  • LIPO(Sec/SPII): 0.000275
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15925773 NCBI
• RefSeq: NP_373306 NCBI
• UniProt: A0A0H3JKS9 UniProt

⊟Protein sequence

• MKTTLLVVEDDEAILHLIDVALTMNYYKVVTAKTGKEADFRLRTEQPDIILLDLGLPDIDGLSLIQQFRDFVDTPIIVISARTEEQTIVEVLDRGANDYMTKPFNIDELRARIRVALRMSRSTETIQSRFTNGPLTIDFDAKSVLVNEQSVHLTPNEFQLLTILCHHVGKVLTYQVLLKSLYGYVNHTEMAALRVHMASLRKKLNYTQDPNTEKKLIITHPRIGYQMQHLE

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: kdpE < kdpD

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications