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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0697 [new locus tag: SA_RS03970 ]
  • pan locus tag?: SAUPAN002648000
  • symbol: SA0697
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA0697 [new locus tag: SA_RS03970 ]
  • symbol: SA0697
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 794972..796096
  • length: 1125
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAAGTATTAGTAGCCATGGATGAGTTTCATGGAATTATTTCGAGTTATCAAGCTAAT
    AGATATGTTGAAGAGGCAGTTGCAAGCCAAATTGAAACTGCAGATGTAGTTCAAGTACCA
    TTGTTTAATGGAAGACATGAATTATTAGATTCTGTATTTTTATGGCAATCTGGGCAAAAG
    TATCGTATACCAGTACATGATGCAGATATGAATGAAGTTGAAGGTGTTTACGGACAAACT
    GATACAGGGATGACCGTTATCGAGGGGAATTTATTTTTAAAAGGTAAAAAACCAATTGTT
    GAACGAACAAGTTATGGTTTAGGAGAAATGATTAAACATGCATTAGATAATGACGCAAAA
    CATGTTGTAATTTCACTAGGTGGGATTGATAGTTTTGATGCTGGTGCAGGTATGTTACAA
    GCATTAGGTGCTCAATTCTATGATGACGAAGGGCGTGTCGTAGATATGAGACAAGGTGCT
    GGTGTAATTAAATATATTCGTCGTATGGATATGTCGAACTTACACCCTAAAATGGAAACA
    GCAAGAATTCAAGTAATGTCGGATTTTTCAAGTCGATTATATGGTAAGCAAAGTGAAATC
    ATGCAAACTTATGATGCGCATCAGTTGCATCATAATCAAGCAGCAGAAATCGATAATTTA
    ATTTGGTATTTTAGTGAGTTATTTAAAAGTGAATTGAAAATTGCAATTGGTCCAGTTGAA
    CGTGGTGGTGCTGGTGGTGGAATTGCAGCAGTCTTGAATGGACTGTATCAAGCTGAAATA
    TTAACCAGTCATGCATTAGTAGACCAACTAACACATTTAGAAAATTTAGTTGAACAAGCG
    GATTTAATTATTTTTGGAGAAGGATTAAATGAAAATGATCAGTTGCTAGAAACGACAACA
    TTGCGTATTGCAGAACTTTGTCATAAACATCAAAAGGTTGCCATTGCAATTTGTGCAACT
    GCTGAAAAGTTTGATTTATTTGAATCACAAGGGGTTACAGCAATGTTTAATACATTTATC
    GATATGCCAGAAACTTATACTGACTTTAAAATGGGATTACAAATTAGGCATTATACGGTT
    CAGTCTTTAAAACTGTTGAAAACACATTTTAATGTTGAGGTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1125

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA0697 [new locus tag: SA_RS03970 ]
  • symbol: SA0697
  • description: hypothetical protein
  • length: 374
  • theoretical pI: 4.94819
  • theoretical MW: 41820.4
  • GRAVY: -0.121658

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Other glycerate kinase (TIGR00045; EC 2.7.1.31; HMM-score: 175.8)
  • TheSEED  :
    • Glycerate kinase (EC 2.7.1.31)
    Amino Acids and Derivatives Alanine, serine, and glycine Glycine and Serine Utilization  Glycerate kinase (EC 2.7.1.31)
    and 5 more
    Carbohydrates Monosaccharides D-galactarate, D-glucarate and D-glycerate catabolism  Glycerate kinase (EC 2.7.1.31)
    Carbohydrates Monosaccharides D-galactarate, D-glucarate and D-glycerate catabolism - gjo  Glycerate kinase (EC 2.7.1.31)
    Carbohydrates One-carbon Metabolism Serine-glyoxylate cycle  Glycerate kinase (EC 2.7.1.31)
    Carbohydrates Organic acids Glycerate metabolism  Glycerate kinase (EC 2.7.1.31)
    Fatty Acids, Lipids, and Isoprenoids Phospholipids Glycerolipid and Glycerophospholipid Metabolism in Bacteria  Glycerate kinase (EC 2.7.1.31)
  • PFAM:
    no clan defined Gly_kinase; Glycerate kinase family (PF02595; HMM-score: 187.1)
    and 1 more
    STAS (CL0502) STAS; STAS domain (PF01740; HMM-score: 14.3)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00405
    • TAT(Tat/SPI): 0.000252
    • LIPO(Sec/SPII): 0.000797
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKVLVAMDEFHGIISSYQANRYVEEAVASQIETADVVQVPLFNGRHELLDSVFLWQSGQKYRIPVHDADMNEVEGVYGQTDTGMTVIEGNLFLKGKKPIVERTSYGLGEMIKHALDNDAKHVVISLGGIDSFDAGAGMLQALGAQFYDDEGRVVDMRQGAGVIKYIRRMDMSNLHPKMETARIQVMSDFSSRLYGKQSEIMQTYDAHQLHHNQAAEIDNLIWYFSELFKSELKIAIGPVERGGAGGGIAAVLNGLYQAEILTSHALVDQLTHLENLVEQADLIIFGEGLNENDQLLETTTLRIAELCHKHQKVAIAICATAEKFDLFESQGVTAMFNTFIDMPETYTDFKMGLQIRHYTVQSLKLLKTHFNVEV

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

  • SA0697 no polycistronic organisation predicted

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]