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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1013 [new locus tag: SA_RS05765 ]
- pan locus tag?: SAUPAN003430000
- symbol: SA1013
- pan gene symbol?: arcC1
- synonym:
- product: carbamate kinase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1013 [new locus tag: SA_RS05765 ]
- symbol: SA1013
- product: carbamate kinase
- replicon: chromosome
- strand: +
- coordinates: 1146842..1147774
- length: 933
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123843 NCBI
- RefSeq: NP_374286 NCBI
- BioCyc: see SA_RS05765
- MicrobesOnline: 103312 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGGCGAAAATAGTAGTAGCATTAGGTGGTAATGCTTTAGGAAAATCACCTCAAGAACAA
CTCGAGCTTGTTAAAAATACTGCGAAATCATTAGTAGGATTAATAACAAAAGGACATGAG
ATTGTTATTAGTCATGGTAATGGACCACAGGTTGGAAGCATTAATTTGGGACTTAACTAT
GCTGCAGAACATAACCAAGGTCCGGCATTTCCATTTGCTGAATGTGGCGCAATGAGTCAA
GCTTACATCGGCTATCAATTACAAGAAAGCTTACAAAATGAATTGCATTCTATTGGAATG
GATAAACAAGTGGTAACACTAGTGACACAAGTTGAAGTTGATGAAAATGATCCGGCATTT
AACAATCCTTCAAAACCAATTGGGTTATTTTACAACAAAGAAGAAGCTGAACAAATTCAA
AAAGAAAAAGGATTTATATTTGTTGAAGATGCTGGAAGAGGATATAGACGCGTTGTTCCT
TCACCACAACCCATCTCTATTATTGAATTAGAGAGTATTAAAACACTTATTAAAAATGAT
ACACTCGTTATTGCTGCTGGTGGTGGAGGTATACCAGTAATTAGAGAGCAACATGATGGT
TTTAAAGGTATTGATGCAGTTATAGACAAAGATAAAACAAGTGCGTTGTTGGGTGCTAAT
ATTCAATGCGATCAATTGATTATTTTAACAGCAATTGATTATGTATATATTAATTTTAAC
ACTGAAAACCAACAGCCTTTGAAAACAACAAATGTTGATGAATTAAAACGATATATAGAC
GAAAATCAATTTGCAAAAGGAAGTATGTTACCAAAAATTGAAGCAGCCATATCATTTATT
GAAAACAATCCAAAAGGAAGTGTGCTTATAACATCATTAAATGAATTAGATGCTGCCTTA
GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1013 [new locus tag: SA_RS05765 ]
- symbol: SA1013
- description: carbamate kinase
- length: 310
- theoretical pI: 4.84797
- theoretical MW: 33596.1
- GRAVY: -0.157419
⊟Function[edit | edit source]
- reaction: EC 2.7.2.2? ExPASyCarbamate kinase ATP + NH3 + CO2 = ADP + carbamoyl phosphate
- TIGRFAM: Energy metabolism Amino acids and amines carbamate kinase (TIGR00746; EC 2.7.2.2; HMM-score: 384.5)and 5 moreAmino acid biosynthesis Glutamate family acetylglutamate kinase (TIGR00761; EC 2.7.2.8; HMM-score: 35.9)Amino acid biosynthesis Glutamate family glutamate 5-kinase (TIGR01027; EC 2.7.2.11; HMM-score: 22.1)Amino acid biosynthesis Glutamate family delta l-pyrroline-5-carboxylate synthetase (TIGR01092; HMM-score: 16.4)Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions putative uridylate kinase (TIGR02076; EC 2.7.4.-; HMM-score: 16.3)cyanobactin biosynthesis protein, PatB/AcyB/McaB family (TIGR04220; HMM-score: 11.5)
- TheSEED :
- Carbamate kinase (EC 2.7.2.2)
Amino Acids and Derivatives Arginine; urea cycle, polyamines Arginine and Ornithine Degradation Carbamate kinase (EC 2.7.2.2)and 2 more - PFAM: no clan defined AA_kinase; Amino acid kinase family (PF00696; HMM-score: 99.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.02881
- TAT(Tat/SPI): 0.000849
- LIPO(Sec/SPII): 0.00301
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Alexander Scherl, Patrice François, Manuela Bento, Jacques M Deshusses, Yvan Charbonnier, Véronique Converset, Antoine Huyghe, Nadia Walter, Christine Hoogland, Ron D Appel, Jean-Charles Sanchez, Catherine G Zimmermann-Ivol, Garry L Corthals, Denis F Hochstrasser, Jacques Schrenzel
Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.
J Microbiol Methods: 2005, 60(2);247-57
[PubMed:15590099] [WorldCat.org] [DOI] (P p)