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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1121 [new locus tag: SA_RS06340 ]
  • pan locus tag?: SAUPAN003579000
  • symbol: SA1121
  • pan gene symbol?: —
  • synonym: yfmF
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1121 [new locus tag: SA_RS06340 ]
  • symbol: SA1121
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1273820..1275085
  • length: 1266
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    TTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAA
    ACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATTACAGCTAGA
    TCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAATGGCCAACCGATAAGTCGTTT
    AATAATCACTTAGCCGATTTATATGGTGCGTATGTGAATAGTACAATTTCAAAATTCAAA
    GATCAGCATGTCATTACATTTTCATTAGAAATTGTTAATGAACGTTATTTAAGAAACGGT
    GAATCATTATTTAATCAAGGATTAGATTTATTACAAGAAATCATTTGGAATCCATTAATT
    GAAAATAAAGCATTCAATGATAATTTTGTTAACCAAGAGAAAACATTATTAGCCAAAAAA
    ATAGAAGCAATGGTAGATAATAAAGCACAATATTCGTTTTTAAAATTACTCGACCATATG
    TTTGAAAATGAAGCATATAAATACTTATCTACAGGACAACTAGAACAAATCCCACATATT
    ACTGCTGAAACACTATATCATACATATCAATCAATGATTAATAATGATCAATGTTCTGTT
    TATGTTGTCGGCAATGTAGAACCTGAAAGTGTTGAGAAACAAATACGTGAAAAATTTGCA
    CTTAAACCATTCGATAAACATCAATTCCAACATTCTACTCATCATTTACACGATGAAGAA
    GTTGATTATATTGTTGAATATGATGACGTGGATCAAGCTAAATTAAATATGGGATACCGT
    TTTCCAACACAATATGGACAAAGTGGATATGCTGCGTTTGTTGTATTTAACATGATGTTT
    GGAGGAGATCCTTCATCTGTTTTATTTAATGAAGTGCGAGAAAAGCAAAGTTTAGCGTAC
    TCTATACATTCACAAATTGATGGCAAAAATGGCTATTTATTTGTTTTGAGTGGGGTTTCA
    AGTGATAAGTACGAAACTGCAAAAGACACTATTATAAGTGAATTTGAAAAAATAAAAGCA
    GGAGATTTCACTGAAGAAAAATTAGAGTTAGCTAAAAAAGTAATCATTTCTCATCGATAT
    GAATCTGAAGATCGTCCGAAAAGTATTATAGAGATTATGCATAACCAAATATTATTAGAG
    CAACCACAAAGCAAAGAAACATTTATAAATGATATACAGAAGGTAAGTCGCGAAGATATT
    GTTTCTGTTGCTGAAAAAGCATTTTTAGATACAATCTATGTGTTGACAAAAGGAGGGGAT
    AAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1266


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1121 [new locus tag: SA_RS06340 ]
  • symbol: SA1121
  • description: hypothetical protein
  • length: 421
  • theoretical pI: 6.03414
  • theoretical MW: 48617.7
  • GRAVY: -0.454632

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG001621: Zinc protease
    CBSS-257314.1.peg.676  FIG001621: Zinc protease
  • PFAM:
    Peptidase_ME (CL0094) Peptidase_M16_C; Peptidase M16 inactive domain (PF05193; HMM-score: 123.1)
    and 2 more
    Peptidase_M16; Insulinase (Peptidase family M16) (PF00675; HMM-score: 17)
    no clan defined Peptidase_M29; Thermophilic metalloprotease (M29) (PF02073; HMM-score: 14.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9185
    • Cytoplasmic Membrane Score: 0.0586
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0224
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006709
    • TAT(Tat/SPI): 0.000717
    • LIPO(Sec/SPII): 0.000537
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLSKLLVRATKKWPTDKSFNNHLADLYGAYVNSTISKFKDQHVITFSLEIVNERYLRNGESLFNQGLDLLQEIIWNPLIENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHMFENEAYKYLSTGQLEQIPHITAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREKFALKPFDKHQFQHSTHHLHDEEVDYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVFNMMFGGDPSSVLFNEVREKQSLAYSIHSQIDGKNGYLFVLSGVSSDKYETAKDTIISEFEKIKAGDFTEEKLELAKKVIISHRYESEDRPKSIIEIMHNQILLEQPQSKETFINDIQKVSREDIVSVAEKAFLDTIYVLTKGGDK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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