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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1154 [new locus tag: SA_RS06550 ]
  • pan locus tag?: SAUPAN003680000
  • symbol: SA1154
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1154 [new locus tag: SA_RS06550 ]
  • symbol: SA1154
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1314480..1315505
  • length: 1026
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    GTGATCTCATTTGAAAATGATTATTTAGAAGGTGCTCATGAAAAAGTATTAAAACGATTA
    GTAGATACAAATCTTGTACAAGCTTCGGGATATGGCTTTGATCAATTCACAGCTCAGGCA
    ATTGAAAAGATTAAAGATACAATTGATTGTCCAAATGCTACAATTCGTTTTTTAGTAGGT
    GGAACACAAACCAATCAGGTTGTTATTAATTCAATGTTAGAAAGTTACGAAGGGGTCATT
    TCAGCAGACACTGGTCATGTTGCTGTGCATGAGGGTGGTGCAATTGAATATAGTGGACAT
    AAAGTAATTACTATACCCTCTAAGGAAGGAAAAGTTAGTGCTTCAGATGTTGAAACTTAC
    ATGGAGACATTTAAAAGTGATTTTAAAAAGGACCATATGGTATTCCCAGGAATGGTATAT
    ATTTCTCATCCTACAGAATATGGCACTTTATACTCTAAATCAGAATTGGAAGAGTTATGC
    AAAGTATGTAAGCAATATCAGCTTCCATTATTTATGGATGGTGCACGATTAGGGTATGGA
    TTGATGAGTGATCAATCAGATATGACTATTAAAGACATCGCTAAATATTGTGATGTATTT
    TATATAGGTGGTACGAAGATAGGTGCATTATGCGGGGAAGCCATTGTTTTTACGAAAAAT
    AATGAACCGAAACAATTTACCACTCGAATCAAACATCACGGTGCCCTTTTAGCAAAAGGA
    CGGTTAACAGGCATACAATTTTTAGAATTATTTACGGACAATTTATATTTTAATATAAGC
    AGACATGCTATCGAAATGGCAAATAAGATGAAAGACGGGTTTAAAAATAAAGGCTATCGT
    CTTTACTTTGATTCTCCAACCAATCAACAATTTTTTATTTTAAGTAACGAGAAAATAGCA
    GAGTTAGAACAAAAAGTTAAATTTGCTGTTTGGGAAAAATACGATGATCAACATCGTGTT
    GTTAGATTCGCAACCAGCTGGGCGACAACCGAAGAAAATTTAAACAAACTATTAGAATTA
    ATCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1026

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1154 [new locus tag: SA_RS06550 ]
  • symbol: SA1154
  • description: hypothetical protein
  • length: 341
  • theoretical pI: 6.18837
  • theoretical MW: 38633.8
  • GRAVY: -0.293548

Function[edit | edit source]

  • TIGRFAM:
    O-phospho-L-seryl-tRNA:Cys-tRNA synthase (TIGR02539; EC 2.5.1.73; HMM-score: 22.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other tyrosine decarboxylase MnfA (TIGR03812; EC 4.1.1.25; HMM-score: 20.3)
    and 3 more
    cysteine desulfurase NifS (TIGR03402; EC 2.8.1.7; HMM-score: 16.7)
    aminotransferase, LLPSF_NHT_00031 family (TIGR04181; HMM-score: 12.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other coenzyme PQQ biosynthesis protein PqqD (TIGR03859; HMM-score: 12.1)
  • TheSEED  :
    • Low-specificity L-threonine aldolase (EC 4.1.2.48)
    Amino Acids and Derivatives Alanine, serine, and glycine Glycine Biosynthesis  Low-specificity L-threonine aldolase (EC 4.1.2.48)
    and 1 more
    Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Threonine degradation  Low-specificity L-threonine aldolase (EC 4.1.2.48)
  • PFAM:
    PLP_aminotran (CL0061) Beta_elim_lyase; Beta-eliminating lyase (PF01212; HMM-score: 100.1)
    and 5 more
    Aminotran_1_2; Aminotransferase class I and II (PF00155; HMM-score: 25.3)
    Aminotran_5; Aminotransferase class-V (PF00266; HMM-score: 22.7)
    SepSecS; O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS (PF05889; HMM-score: 14.1)
    Pyridoxal_deC; Pyridoxal-dependent decarboxylase conserved domain (PF00282; HMM-score: 11.3)
    GHD (CL0369) DUF1945; Domain of unknown function (DUF1945) (PF09178; HMM-score: 8.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.02291
    • TAT(Tat/SPI): 0.001091
    • LIPO(Sec/SPII): 0.000955
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MISFENDYLEGAHEKVLKRLVDTNLVQASGYGFDQFTAQAIEKIKDTIDCPNATIRFLVGGTQTNQVVINSMLESYEGVISADTGHVAVHEGGAIEYSGHKVITIPSKEGKVSASDVETYMETFKSDFKKDHMVFPGMVYISHPTEYGTLYSKSELEELCKVCKQYQLPLFMDGARLGYGLMSDQSDMTIKDIAKYCDVFYIGGTKIGALCGEAIVFTKNNEPKQFTTRIKHHGALLAKGRLTGIQFLELFTDNLYFNISRHAIEMANKMKDGFKNKGYRLYFDSPTNQQFFILSNEKIAELEQKVKFAVWEKYDDQHRVVRFATSWATTEENLNKLLELI

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]